Hg_chrom8_TN10mRNA_16543
Organism: Heterodera glycines Gene Locus: chr8:9313052-9330659 Feature type: polypeptideProtein Sequence
Length: 1,242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.899 | 1.039 | 0.777 | 0.819 | 1.239 | 0.92 | 1.409 | 1.521 | 1.393 | 0.549 | 1.658 | 1.61 | 0.759 | 1.035 | 1.012 | 0.766 | 0.976 | 0.991 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKCKCKNLSLFRKGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.098
|
0.022
|
0.177
|
0.522
|
0.497
|
0.405
|
0.009
|
0.632
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000935
|
1.000
|
5.000
|
Hsc_gene_22271.t1;Hsc_gene_22271.t2;Hsc_gene_22271.t3;Hsc_gene_22271.t4;Hsc_gene_22271.t6
|
Hsc_gene_22271.t1;Hsc_gene_22271.t2;Hsc_gene_22271.t3;Hsc_gene_22271.t4;Hsc_gene_22271.t5;Hsc_gene_22271.t6
|
— |
Q95V25.2 Calcium-activated potassium channel slo-1 [Caenorhabditis elegans]
|
KAI1724929.1 calcium-activated BK potassium channel alpha subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0006811|GO:0006813|GO:0016020|GO:0055085
|
GO:0008150_0.963|GO:0009987_0.916|GO:0006810_0.862|GO:0051179_0.862|GO:0051234_0.862|GO:0055085_0.812|GO:0003674_0.805|GO:0006811_0.758|GO:0034220_0.756|GO:0005575_0.701|GO:0110165_0.701|GO:0098660_0.689|GO:0005215_0.682|GO:0022857_0.682|GO:0006812_0.676|GO:0030001_0.673|GO:0098655_0.670|GO:0098662_0.669|GO:0015075_0.645|GO:0022803_0.640|GO:0015267_0.636|GO:0005216_0.631|GO:0006813_0.631|GO:0071805_0.629|GO:0008324_0.621|GO:0015318_0.620|GO:0016020_0.609|GO:0022890_0.607|GO:0046873_0.605|GO:0005261_0.601|GO:0071944_0.586|GO:0005267_0.578|GO:0015079_0.578|GO:0005886_0.576|GO:0022836_0.550|GO:0015276_0.527|GO:0022834_0.527|GO:0065007_0.515|GO:0099094_0.510|GO:0022839_0.501
|
IPR003929+524-599+|IPR005821+155-374+|IPR027359+146-263+|IPR036291+385-550+|IPR047871+130-598+|IPR048735+1064-1180+
|
— |
PF00520+155-374+Ion_transport_protein|PF03493+524-599+Calcium-activated_BK_potassium_channel_alpha_subunit|PF21014+1064-1180+Ca2+-activated_K+_channel_Slowpoke,_TrkA_C_like_domain|PF22614+384-501_834-953+Calcium-activated_potassium_channel_slowpoke-like_RCK_domain
|
G3DSA:1.10.287.70:FF:000015+151-370+Calcium-activated_potassium_channel_subunit_alpha-1_isoform_X7|G3DSA:1.20.120.350:FF:000035+145-264+Calcium-activated_potassium_channel_slowpoke|G3DSA:3.40.50.720:FF:000005+379-515+calcium-activated_potassium_channel_subunit_alpha-1_isoform_X6
|
PTHR10027+130-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-1242
|
3mt5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
139263.700
|
6.198
|
-6.500
|
22.142
|
13.366
|
42.593
|
57.407
|
11.514
|
10.628
|
48.229
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
803.406
|
1433.934
|
1219.435
|
369.324
|
181.438
|
223.835
|
127.191
|
321.614
|
94.169
|
1990.486
|
1177.779
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.464
|
-2.094
|
-1.614
|
-1.056
|
— |
-0.808
|
0.420
|
-1.199
|
-4.527
|
— |
-3.156
|
— | — |
No JSON data available for plots.