Hg_chrom8_TN10mRNA_16544
Organism: Heterodera glycines Gene Locus: chr8:9349501-9351722 Feature type: polypeptideProtein Sequence
Length: 186
(Signal peptide: 1-48)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 2.001 | 0.684 | 0.371 | 0.538 | 1.516 | 1.28 | 1.344 | 0.597 | 1.162 | 0.244 | 1.265 | 2.389 | 0.931 | 1.865 | 1.382 | 0.97 | 0.407 | 0.0 | 0.158 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15634
|
— | — |
0.667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.936
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
50-76
|
0.970
|
17-67
|
0.999
|
1-48
|
0.528
|
0.947
|
0.000
|
0.000
|
0.189
|
0.382
|
0.158
|
0.207
|
0.103
|
0.026
|
0.033
|
0.015
|
0.052
|
0.850
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012412
|
1.000
|
1.000
|
Hsc_gene_22270.t1
|
Hsc_gene_22270.t1
|
— | — |
UYO37319.1 FMRFamide-related peptide 1 precursor [Heterodera glycines]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007218
|
— |
IPR002544+72-81_100-108_115-123_144-153_179-186+|IPR051041+72-186+
|
— |
PF01581+72-81_100-108_115-123_144-153_179-186+FMRFamide_related_peptide_family
|
— |
PTHR20986+72-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
20369.660
|
11.236
|
9.500
|
20.430
|
11.828
|
50.538
|
49.462
|
13.441
|
6.989
|
54.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1108.364
|
354.658
|
4768.159
|
453.685
|
55.432
|
109.189
|
39.418
|
3039.943
|
79.136
|
1482.061
|
880.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.521
|
0.218
|
-3.287
|
-3.067
|
0.994
|
-1.462
|
4.702
|
-6.132
|
— | — | — | — | — |