Hg_chrom8_TN10mRNA_16545
Organism: Heterodera glycines Gene Locus: chr8:9354008-9358007 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 0.63 | 0.821 | 0.519 | 1.104 | 1.622 | 0.968 | 0.753 | 0.535 | 0.977 | 1.232 | 1.24 | 1.422 | 0.927 | 0.615 | 0.947 | 1.58 | 1.232 | 1.158 | 0.177 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15635
|
— | — |
0.778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— |
SKSKEKKGGGWFAKKKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.143
|
0.223
|
0.012
|
0.447
|
0.462
|
0.379
|
0.533
|
0.016
|
0.527
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004865
|
1.000
|
2.000
|
Hsc_gene_22269.t1;Hsc_gene_22269.t2
|
Hsc_gene_22269.t1;Hsc_gene_22269.t2
|
— |
Q2IBC1.1 Caveolin-1 [Rhinolophus ferrumequinum]
|
KAI1715463.1 caveolin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070836
|
GO:0005575_0.958|GO:0110165_0.958|GO:0016020_0.926|GO:0071944_0.916|GO:0005886_0.903|GO:0008150_0.746|GO:0009987_0.707|GO:0005622_0.633|GO:0098590_0.601|GO:0051179_0.598|GO:0065007_0.595|GO:0043226_0.584|GO:0003674_0.582|GO:0050789_0.572|GO:0043229_0.563|GO:0050896_0.560|GO:0043227_0.551|GO:0050794_0.545|GO:0005737_0.537|GO:0045121_0.521|GO:0098857_0.521|GO:0006810_0.519|GO:0051234_0.519|GO:0005901_0.509|GO:0044853_0.509|GO:0043231_0.508
|
IPR001612+137-316_190-316+
|
— |
PF01146+190-316+Caveolin
|
— |
PTHR10844+137-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-191
|
1.000
|
192-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
35950.780
|
7.303
|
2.500
|
23.795
|
8.735
|
49.096
|
50.904
|
12.651
|
11.145
|
55.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
832.640
|
4122.253
|
1345.189
|
469.954
|
538.727
|
499.830
|
376.580
|
412.245
|
157.718
|
612.721
|
417.719
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.844
|
-3.270
|
-1.409
|
0.165
|
— |
-0.400
|
-0.383
|
— | — | — | — | — | — |
No JSON data available for plots.