Hg_chrom8_TN10mRNA_16546
Organism: Heterodera glycines Gene Locus: chr8:9361179-9363412 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.199 | 0.719 | 1.031 | 0.355 | 0.945 | 1.454 | 0.614 | 2.577 | 0.573 | 1.602 | 0.547 | 2.729 | 1.289 | 0.892 | 0.947 | 0.81 | 0.676 | 0.703 | 1.983 | 1.364 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15636
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.547
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — | — |
0.804
|
0.000
|
0.000
|
— |
0.401
|
0.234
|
0.019
|
0.340
|
0.227
|
0.281
|
0.167
|
0.072
|
0.160
|
0.339
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002150
|
3.000
|
1.000
|
Hsc_gene_4691.t1
|
Hsc_gene_4691.t1
|
— |
A2AJ15.1 Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Mus musculus]
|
KAH7727944.1 Protein MANS-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004571|GO:0005509|GO:0005975|GO:0016020
|
GO:0008150_0.868|GO:0005575_0.824|GO:0110165_0.824|GO:0003674_0.765|GO:0005622_0.760|GO:0005737_0.740|GO:0016020_0.723|GO:0008152_0.720|GO:0044238_0.682|GO:0003824_0.678|GO:0043226_0.674|GO:0043229_0.668|GO:0043227_0.660|GO:0043231_0.642|GO:0071944_0.642|GO:0043170_0.639|GO:0005886_0.633|GO:0019538_0.628|GO:0016787_0.597|GO:0016798_0.565|GO:0004553_0.563|GO:0009987_0.562|GO:0004559_0.556|GO:0015923_0.556|GO:0005773_0.548|GO:0012505_0.539|GO:1901135_0.508
|
IPR001382+1-191_91-115_154-174+|IPR012341+1-193+|IPR036026+1-192+|IPR050749+1-191+
|
— |
PF01532+1-191+Glycosyl_hydrolase_family_47
|
— |
PTHR11742+1-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
8zpw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
22277.390
|
6.329
|
-1.000
|
24.742
|
17.010
|
43.299
|
56.701
|
13.402
|
11.340
|
44.330
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
261.743
|
40.811
|
31.114
|
29.620
|
33.598
|
32.308
|
41.729
|
27.844
|
18.641
|
1042.262
|
603.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.599
|
— | — | — | — | — |
0.721
|
— | — | — | — | — |