Hg_chrom9_TN10mRNA_16553
Organism: Heterodera glycines Gene Locus: chr9:35516-39045 Feature type: polypeptideProtein Sequence
Length: 553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 0.715 | 1.118 | 0.686 | 1.085 | 1.901 | 0.71 | 2.712 | 1.005 | 1.124 | 0.438 | 1.276 | 1.557 | 0.661 | 1.255 | 0.904 | 1.126 | 0.986 | 1.53 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.111
|
0.067
|
0.021
|
0.057
|
0.560
|
0.518
|
0.540
|
0.001
|
0.500
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012413
|
1.000
|
1.000
|
Hsc_gene_21470.t1
|
Hsc_gene_21470.t1
|
— |
Q94177.2 Progestin and adipoQ receptor-like protein 1 [Caenorhabditis elegans]
|
KAI3414185.1 Paqr-1p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.933|GO:0009987_0.755|GO:0065007_0.712|GO:0005575_0.694|GO:0110165_0.694|GO:0050789_0.685|GO:0005886_0.678|GO:0016020_0.678|GO:0071944_0.678|GO:0050794_0.666|GO:0050896_0.663|GO:0042221_0.542
|
IPR004254+236-534_304-524+
|
— |
PF03006+304-524+Haemolysin-III_related
|
— |
PTHR20855+236-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-248
|
1.000
|
249-553
|
5lxa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
63489.260
|
6.220
|
-5.000
|
27.125
|
15.552
|
50.814
|
49.186
|
14.467
|
12.658
|
46.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2460.679
|
1196.584
|
2347.848
|
2691.060
|
3337.782
|
3147.622
|
2238.297
|
3566.608
|
2539.231
|
1913.873
|
2181.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
1.032
|
0.305
|
0.279
|
— |
-0.484
|
— |
-0.533
|
— | — | — | — | — |
No JSON data available for plots.