Hg_chrom9_TN10mRNA_16554
Organism: Heterodera glycines Gene Locus: chr9:41065-42216 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.58 | 0.353 | 1.339 | 0.809 | 0.747 | 0.462 | 0.485 | 0.647 | 1.706 | 1.03 | 2.856 | 1.618 | 1.307 | 2.18 | 0.555 | 0.955 | 1.03 | 0.0 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15644
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-27
|
0.996
|
17-45
|
0.995
|
— | — |
0.000
|
— | — |
0.093
|
0.923
|
0.019
|
0.113
|
0.047
|
0.019
|
0.026
|
0.033
|
0.042
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012414
|
1.000
|
1.000
|
Hsc_gene_21469.t1
|
Hsc_gene_21469.t1
|
— | — |
KAH7698294.1 Protein F29B9.11 [Aphelenchus avenae];KAH7720099.1 Protein F29B9.11 [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
11901.160
|
10.923
|
11.500
|
25.243
|
8.738
|
44.660
|
55.340
|
18.447
|
6.796
|
45.631
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
2504.947
|
567.642
|
2096.259
|
1761.251
|
2320.851
|
2512.349
|
1999.866
|
3341.064
|
4400.291
|
2184.193
|
3133.949
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.655
|
1.497
|
-0.142
|
0.366
|
— |
-0.319
|
0.308
|
-0.598
|
— | — | — | — | — |
No JSON data available for plots.