SCN Proteipedia

Hg_chrom9_TN10mRNA_16564

Organism: Heterodera glycines Gene Locus: chr9:80865-83497 Feature type: polypeptide

Protein Sequence

Length: 257

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.814	0.995	0.849	2.281	1.102	1.097	1.39	1.167	1.383	0.736	0.354	0.916	1.621	0.823	1.35	1.112	0.702	0.766	0.599	0.687	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15654	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.778	0.231	0.018	0.632	0.065	0.029	0.036	0.011	0.149	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012422	1.000	1.000	Hsc_gene_21459.t1	Hsc_gene_21459.t1	—	Q95Y12.1 Probable histone-lysine N-methyltransferase set-23 [Caenorhabditis elegans]	KHJ75593.1 SET domain protein, partial [Oesophagostomum dentatum]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.874\|GO:0003674_0.830\|GO:0009987_0.794\|GO:0005575_0.793\|GO:0110165_0.782\|GO:0003824_0.692\|GO:0065007_0.678\|GO:0005622_0.672\|GO:0050789_0.664\|GO:0008152_0.658\|GO:0016020_0.651\|GO:0050794_0.650\|GO:0016043_0.645\|GO:0071840_0.645\|GO:0016740_0.640\|GO:0005488_0.628\|GO:0043170_0.622\|GO:0140096_0.618\|GO:0008168_0.609\|GO:0016741_0.609\|GO:0043226_0.607\|GO:0006325_0.597\|GO:0006338_0.597\|GO:0043229_0.596\|GO:0044237_0.582\|GO:0008276_0.579\|GO:0043227_0.572\|GO:0009058_0.568\|GO:0019222_0.558\|GO:0042054_0.557\|GO:0044249_0.557\|GO:0140993_0.557\|GO:0009059_0.551\|GO:0043231_0.551\|GO:0060255_0.546\|GO:0140938_0.532\|GO:0008170_0.527\|GO:0008757_0.527\|GO:0016278_0.527\|GO:0016279_0.527\|GO:0044238_0.527\|GO:0031323_0.516\|GO:0010467_0.503	IPR001214+102-226_102-232_114-226+\|IPR003616+236-252+\|IPR046341+1-255_2-242+\|IPR050973+2-252+	SM00317+102-232+	PF00856+114-226+SET_domain	—	PTHR46223+2-252+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-257	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	27939.450	5.619	-3.000	22.568	11.284	43.191	56.809	11.284	11.284	55.642

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	117.160	96.575	131.850	126.299	108.232	95.303	125.737	104.250	112.201	132.832	123.990

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	0.409	—	0.412	—	—	—	—	—

No JSON data available for plots.

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