SCN Proteipedia

Hg_chrom9_TN10mRNA_16566

Organism: Heterodera glycines Gene Locus: chr9:86650-89646 Feature type: polypeptide

Protein Sequence

Length: 373

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	1.683	1.024	0.647	1.698	2.887	0.319	1.34	0.715	1.087	1.219	1.419	0.894	0.258	1.204	1.187	0.835	0.528	0.412	0.237	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15656	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKREQNNAAAARYRQRQK	10-30	0.991	—	—	—	—	0.000	—	—	0.873	0.191	0.007	0.401	0.023	0.035	0.080	0.010	0.057	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004020	2.000	1.000	Hsc_gene_13306.t1	—	—	Q9XUK2.2 Transcription factor zip-3 [Caenorhabditis elegans]	KHJ92685.1 basic region leucine zipper [Oesophagostomum dentatum]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355	GO:0008150_0.952\|GO:0005575_0.949\|GO:0110165_0.947\|GO:0009987_0.925\|GO:0065007_0.923\|GO:0005622_0.922\|GO:0050789_0.912\|GO:0043226_0.878\|GO:0016020_0.870\|GO:0043229_0.860\|GO:0050896_0.809\|GO:0043227_0.800\|GO:0048519_0.792\|GO:0051716_0.785\|GO:0005634_0.781\|GO:0043231_0.781\|GO:0006950_0.738\|GO:0048583_0.727\|GO:0033554_0.720\|GO:0002376_0.700\|GO:0044419_0.693\|GO:0009605_0.692\|GO:0009607_0.692\|GO:0048585_0.692\|GO:0080134_0.691\|GO:0043207_0.690\|GO:0051707_0.689\|GO:0006952_0.687\|GO:0098542_0.686\|GO:0006955_0.685\|GO:0045087_0.685\|GO:0140546_0.685\|GO:0002682_0.684\|GO:0031347_0.683\|GO:0002831_0.681\|GO:0032101_0.680\|GO:0050776_0.680\|GO:0045088_0.678\|GO:0002683_0.675\|GO:0002832_0.670\|GO:0006986_0.670\|GO:0031348_0.670\|GO:0032102_0.670\|GO:0034514_0.670\|GO:0034620_0.670\|GO:0035966_0.670\|GO:0035967_0.670\|GO:0045824_0.670\|GO:0050777_0.670	IPR004827+305-369_307-367_311-359_312-327+\|IPR046347+311-364+	SM00338+305-369+	PF07716+311-359+Basic_region_leucine_zipper	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	79-333	2.000	1-78;334-373	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.529	42837.400	6.197	-2.000	32.440	7.239	64.343	35.657	16.622	15.818	43.700

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	violet	505.261	376.084	463.560	363.276	315.773	1003.845	1045.928	290.983	476.949	405.510	436.127

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.187	-0.243	-0.235	1.684	—	-1.895	1.989	—	—	—	—	—

No JSON data available for plots.

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