Hg_chrom9_TN10mRNA_16567
Organism: Heterodera glycines Gene Locus: chr9:105244-120328 Feature type: polypeptideProtein Sequence
Length: 2,034
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.075 | 0.867 | 1.967 | 0.934 | 1.588 | 0.96 | 1.622 | 0.841 | 0.691 | 0.663 | 1.417 | 0.765 | 0.936 | 1.726 | 1.152 | 0.895 | 0.886 | 1.551 | 0.68 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15657
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRKR,RHRR,RKRK,RGGRRRGRGG,RRRRKRPSTTCQNRRRLL
|
55-75
|
0.981
|
88-111
|
0.997
|
— | — |
0.000
|
— | — |
0.203
|
0.082
|
0.021
|
0.216
|
0.259
|
0.157
|
0.394
|
0.094
|
0.534
|
0.585
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012424
|
1.000
|
1.000
|
Hsc_gene_21456.t1
|
Hsc_gene_21456.t1;Hsc_gene_21457.t1
|
— |
Q19791.3 A disintegrin and metalloproteinase with thrombospondin motifs gon-1 [Caenorhabditis elegans]
|
KAH7721927.1 A disintegrin and metalloproteinase with thrombospondin motifs 9-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0030198
|
GO:0008150_0.901|GO:0003674_0.720|GO:0005575_0.691|GO:0009987_0.690|GO:0032502_0.684|GO:0110165_0.684|GO:0048856_0.634|GO:0032501_0.618|GO:0065007_0.564|GO:0003824_0.563|GO:0140096_0.546|GO:0016787_0.535|GO:0050789_0.534|GO:0007275_0.530|GO:0048731_0.518|GO:0008233_0.513
|
IPR000884+855-910_858-910_859-909_1172-1227_1324-1384_1327-1384_1385-1435_1385-1439_1437-1495_1440-1495_1496-1558_1497-1553_1556-1613_1559-1613_1633-1690_1634-1690_1691-1741_1691-1745_1743-1801_1746-1801_1802-1864_1803-1859_1862-1919_1865-1919+|IPR001590+549-762+|IPR010294+1022-1139+|IPR013273+864-882_980-999_1000-1019+|IPR024079+544-764+|IPR036383+853-909_858-909_1324-1384_1325-1383_1378-1438_1385-1439_1433-1494_1440-1498_1489-1557_1499-1558_1552-1612_1559-1612_1631-1690_1633-1689_1684-1744_1691-1745_1739-1800_1746-1804_1795-1863_1805-1864_1858-1918_1865-1918+|IPR041645+777-844+|IPR050439+530-1439+
|
SM00209+858-910_1172-1227_1327-1384_1385-1439_1440-1495_1496-1558_1559-1613_1633-1690_1691-1745_1746-1801_1802-1864_1865-1919+
|
PF00090+859-909+Thrombospondin_type_1_domain|PF05986+1022-1139+ADAM-TS_Spacer_1|PF13688+551-735+Metallo-peptidase_family_M12|PF17771+777-844+ADAMTS_cysteine-rich_domain_2|PF19030+1328-1383_1386-1438_1441-1494_1497-1557_1560-1612_1634-1689_1692-1744_1747-1800_1803-1863_1866-1918+Thrombospondin_type_1_domain
|
G3DSA:2.20.100.10:FF:000005+1439-1495_1559-1613_1745-1801_1865-1919+ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9|G3DSA:2.20.100.10:FF:000006+858-909+A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1|G3DSA:2.60.120.830:FF:000001+1006-1148+A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1|G3DSA:3.40.390.10:FF:000001+544-762+A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1
|
PTHR13723+530-1439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-191;485-534;1264-1320;1996-2034
|
3.000
|
192-484;535-1263;1321-1995
|
2v4b_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
227954.850
|
8.362
|
83.000
|
26.450
|
10.324
|
50.787
|
49.213
|
16.077
|
10.374
|
53.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
green
|
2273.966
|
717.153
|
609.584
|
982.576
|
767.917
|
1236.798
|
453.128
|
240.361
|
5127.716
|
4224.996
|
4611.876
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.464
|
0.317
|
0.797
|
-0.388
|
0.702
|
-1.440
|
-2.473
|
1.058
|
— |
-2.211
|
— | — | — |
No JSON data available for plots.