Hg_chrom9_TN10mRNA_16575
Organism: Heterodera glycines Gene Locus: chr9:174270-175094 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.163 | 0.26 | 1.232 | 0.595 | 1.465 | 0.51 | 0.714 | 1.111 | 1.641 | 0.866 | 0.84 | 2.579 | 0.962 | 1.749 | 1.633 | 0.703 | 0.758 | 0.0 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15665
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.548
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
40-60
|
0.998
|
15-55
|
1.000
|
— | — |
0.000
|
— | — |
0.055
|
0.953
|
0.077
|
0.159
|
0.044
|
0.028
|
0.096
|
0.131
|
0.028
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004868
|
2.000
|
1.000
|
Hsc_gene_21444.t1
|
Hsc_gene_21444.t1
|
— |
B4NE93.1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Drosophila willistoni]
|
KAF7637675.1 Nfu_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.915|GO:0016020_0.847|GO:0005622_0.843|GO:0043226_0.808|GO:0043229_0.805|GO:0005737_0.796|GO:0043227_0.783|GO:0043231_0.777|GO:0005739_0.572|GO:0003674_0.531
|
IPR014824+59-120_59-137+|IPR036498+42-123_56-120+
|
SM00932+59-137+
|
PF08712+59-120+Scaffold_protein_Nfu/NifU_N_terminal
|
— |
PTHR11178+53-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
2ltm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
15909.590
|
10.994
|
14.000
|
20.714
|
12.143
|
47.143
|
52.857
|
15.714
|
5.000
|
45.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
21.382
|
24.860
|
33.225
|
41.185
|
53.700
|
36.438
|
36.830
|
23.223
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.592
|
0.417
|
— |
-0.545
|
— |
-0.755
|
0.807
|
— |
6.221
|
— | — | — |
No JSON data available for plots.