Hg_chrom9_TN10mRNA_16577
Organism: Heterodera glycines Gene Locus: chr9:176373-176789 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 0.629 | 0.491 | 1.243 | 0.901 | 1.155 | 0.429 | 0.901 | 1.001 | 1.217 | 0.41 | 2.65 | 3.504 | 0.866 | 1.471 | 0.901 | 0.295 | 2.184 | 0.0 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15667
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.611
|
0.132
|
0.022
|
0.300
|
0.067
|
0.163
|
0.036
|
0.008
|
0.068
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012432
|
2.000
|
0.000
|
0.000
|
— | — | — | — |
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.925|GO:0110165_0.923|GO:0016020_0.856|GO:0071944_0.812|GO:0005886_0.802|GO:0003674_0.789|GO:0005622_0.788|GO:0005737_0.788|GO:0043226_0.747|GO:0043229_0.739|GO:0043227_0.738|GO:0005488_0.725|GO:0043231_0.718|GO:0097159_0.655|GO:0003676_0.650|GO:0003723_0.650|GO:0003729_0.650|GO:0008150_0.586|GO:0009987_0.530
|
IPR000626+13-55_17-59+|IPR029071+7-59+
|
— |
PF00240+13-55+Ubiquitin_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
12883.300
|
8.131
|
3.000
|
19.820
|
17.117
|
35.135
|
64.865
|
11.712
|
8.108
|
45.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
26.595
|
3.063
|
4.364
|
7.040
|
5.735
|
4.281
|
2.023
|
0.816
|
0.000
|
106.107
|
60.633
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-2.481
|
— |
-7.536
|
— |
-4.162
|
— | — |
No JSON data available for plots.