Hg_chrom9_TN10mRNA_16579
Organism: Heterodera glycines Gene Locus: chr9:185107-189924 Feature type: polypeptideProtein Sequence
Length: 766
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.972 | 0.76 | 0.315 | 0.957 | 2.611 | 0.777 | 0.783 | 0.58 | 1.006 | 0.969 | 1.305 | 1.269 | 1.381 | 1.332 | 1.343 | 0.642 | 0.633 | 1.305 | 1.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15669
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PPPKRSK,SKKEKKKLKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.796
|
0.052
|
0.003
|
0.536
|
0.063
|
0.061
|
0.061
|
0.030
|
0.050
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004869
|
1.000
|
2.000
|
Hsc_gene_21442.t1;Hsc_gene_21442.t2
|
Hsc_gene_21442.t1;Hsc_gene_21442.t2
|
— |
Q96PV6.3 Leukocyte receptor cluster member 8 [Homo sapiens]
|
KAI3414217.1 SAC3/GANP/Nin1/mts3/eIF-3 p25 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.942|GO:0110165_0.939|GO:0005622_0.885|GO:0016020_0.871|GO:0043226_0.835|GO:0043229_0.828|GO:0043227_0.787|GO:0043231_0.775|GO:0008150_0.703|GO:0005634_0.684|GO:0009987_0.669|GO:0008152_0.534|GO:0043170_0.534|GO:0044238_0.532|GO:0009058_0.518|GO:0044237_0.518|GO:0044249_0.511|GO:0009059_0.504
|
IPR005062+533-751+|IPR045107+90-753+
|
— |
PF03399+533-751+SAC3/GANP_family
|
— |
PTHR12436+90-753+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-159;233-500
|
2.000
|
160-232;501-766
|
9dlv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.938
|
87097.760
|
9.843
|
29.000
|
24.413
|
11.619
|
52.089
|
47.911
|
14.491
|
9.922
|
47.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
879.794
|
1760.743
|
890.458
|
754.328
|
779.448
|
693.705
|
2053.273
|
717.981
|
550.271
|
567.669
|
560.213
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.213
|
-1.360
|
-0.131
|
— | — |
1.576
|
— |
1.658
|
— | — | — | — | — |
No JSON data available for plots.