SCN Proteipedia

Hg_chrom9_TN10mRNA_16580

Organism: Heterodera glycines Gene Locus: chr9:190683-199276 Feature type: polypeptide

Protein Sequence

Length: 1,491

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.084	1.357	1.207	0.578	0.917	1.29	0.399	0.704	1.282	1.369	1.118	1.46	1.174	0.838	1.068	1.303	0.836	0.833	0.258	0.473	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15670	—	—	1.222	1.000	2.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRAR	—	—	—	—	—	—	0.000	—	—	0.515	0.067	0.007	0.718	0.051	0.075	0.056	0.030	0.176	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012434	1.000	1.000	Hsc_gene_21441.t1	Hsc_gene_21441.t1	—	G5EEM5.1 Zygote defective protein 9 [Caenorhabditis elegans]	KAI1721756.1 HEAT repeat domain-containing protein [Ditylenchus destructor]	No	-0.150

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007051\|GO:0015631\|GO:0030951\|GO:0046785\|GO:0051010\|GO:0061863	GO:0008150_0.959\|GO:0005575_0.932\|GO:0110165_0.926\|GO:0009987_0.919\|GO:0005622_0.860\|GO:0043226_0.811\|GO:0016043_0.791\|GO:0071840_0.791\|GO:0043229_0.787\|GO:0006996_0.731\|GO:0005737_0.678\|GO:0043228_0.646\|GO:0043232_0.646\|GO:0007010_0.603\|GO:0007049_0.600\|GO:0022402_0.600\|GO:0016020_0.597\|GO:0007017_0.596\|GO:0000226_0.591\|GO:0099080_0.585\|GO:0003674_0.573\|GO:0005488_0.523\|GO:0005856_0.518\|GO:0000280_0.507\|GO:0048285_0.507	IPR011989+10-233_287-510_615-834+\|IPR016024+19-1224+\|IPR034085+5-241_282-518_609-844+\|IPR045110+1029-1397+\|IPR048491+22-210_299-487_627-813+	SM01349+5-241_282-518_609-844+	PF21041+22-210_299-487_627-813+XMAP215/Dis1/CLASP,_TOG_domain	G3DSA:1.25.10.10:FF:000019+5-235_282-512_609-838+Cytoskeleton-associated_protein_5	PTHR12609+1029-1397+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	521-606;829-1055	3.000	1-520;607-828;1056-1491	2qk2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.738	165769.250	8.039	17.500	26.157	7.579	51.241	48.759	14.017	12.140	50.905

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	2898.273	4777.526	3098.314	3018.636	3129.103	3149.553	3750.428	3375.526	2298.489	1843.922	2038.736

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.855	-0.799	—	—	—	0.262	—	0.294	—	—	—	—	—

No JSON data available for plots.

Back to Browser