Hg_chrom9_TN10mRNA_16581
Organism: Heterodera glycines Gene Locus: chr9:209893-210284 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.64 | 0.64 | 0.167 | 0.633 | 0.917 | 1.176 | 0.437 | 0.459 | 1.427 | 1.364 | 0.278 | 3.238 | 3.313 | 0.882 | 1.498 | 1.311 | 0.301 | 1.807 | 0.706 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15671
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.463
|
0.216
|
0.023
|
0.263
|
0.227
|
0.408
|
0.175
|
0.033
|
0.128
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012432
|
2.000
|
0.000
|
0.000
|
— | — | — | — |
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.942|GO:0110165_0.939|GO:0016020_0.905|GO:0071944_0.869|GO:0005886_0.867|GO:0005622_0.783|GO:0005737_0.783|GO:0043226_0.777|GO:0003674_0.765|GO:0043227_0.755|GO:0043229_0.749|GO:0043231_0.749|GO:0005488_0.709|GO:0097159_0.654|GO:0003676_0.650|GO:0003723_0.650|GO:0003729_0.650|GO:0008150_0.598|GO:0009987_0.535
|
IPR000626+6-59_12-55+|IPR029071+6-59+
|
— |
PF00240+12-55+Ubiquitin_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-109
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
12655.070
|
9.177
|
3.500
|
16.514
|
16.514
|
34.862
|
65.138
|
10.092
|
6.422
|
42.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
15.170
|
1.905
|
2.815
|
4.539
|
3.156
|
3.977
|
0.611
|
0.279
|
0.000
|
59.887
|
34.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-2.692
|
-3.960
|
— | — | — | — | — | — |
No JSON data available for plots.