Hg_chrom9_TN10mRNA_16585
Organism: Heterodera glycines Gene Locus: chr9:248288-249532 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 0.786 | 0.615 | 0.333 | 0.322 | 1.61 | 0.575 | 0.966 | 1.288 | 1.697 | 1.025 | 1.989 | 0.671 | 1.301 | 2.169 | 1.242 | 1.03 | 0.805 | 1.115 | 0.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RPRR,KKALGCFISPNWPKMRTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.157
|
0.010
|
0.487
|
0.212
|
0.092
|
0.307
|
0.475
|
0.186
|
0.422
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001345
|
4.000
|
1.000
|
Hsc_gene_18638.t1
|
— | — |
G5EEM5.1 Zygote defective protein 9 [Caenorhabditis elegans]
|
KAF7633894.1 RTR1-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.923|GO:0008150_0.922|GO:0110165_0.916|GO:0009987_0.884|GO:0005622_0.862|GO:0043226_0.839|GO:0043229_0.838|GO:0071840_0.732|GO:0016043_0.722|GO:0006996_0.695|GO:0007049_0.684|GO:0022402_0.682|GO:0007010_0.677|GO:0007017_0.677|GO:0000226_0.675|GO:0007051_0.670|GO:0043228_0.661|GO:0043232_0.652|GO:0065007_0.602|GO:0005737_0.601|GO:0050789_0.593|GO:0050794_0.584|GO:0003674_0.572|GO:0005856_0.560|GO:0099080_0.557|GO:0015630_0.556|GO:0005815_0.551|GO:0005814_0.547|GO:0032501_0.547|GO:0005813_0.546|GO:0005819_0.540|GO:0005488_0.537|GO:0016020_0.525|GO:0032502_0.518|GO:0048856_0.518|GO:0007275_0.503|GO:0048518_0.503
|
IPR011989+31-124+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
23363.520
|
12.216
|
27.000
|
24.638
|
6.280
|
49.275
|
50.725
|
19.324
|
5.314
|
46.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
78.042
|
159.478
|
105.694
|
82.833
|
72.192
|
55.236
|
45.910
|
90.528
|
101.737
|
35.681
|
63.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.824
|
-1.082
|
— | — | — | — |
0.608
|
-0.839
|
— | — | — | — | — |
No JSON data available for plots.