Hg_chrom9_TN10mRNA_16587
Organism: Heterodera glycines Gene Locus: chr9:255407-256548 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 1.171 | 0.654 | 0.868 | 1.559 | 0.922 | 0.214 | 1.259 | 1.519 | 1.653 | 1.308 | 1.481 | 0.799 | 0.346 | 1.321 | 0.976 | 1.061 | 0.763 | 1.107 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15677
|
— | — |
1.778
|
1.000
|
2.000
|
1.000
|
2.000
|
3.000
|
1.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKTALSIVYQRVRQKIK
|
63-83
|
0.902
|
— | — | — | — |
0.000
|
— | — |
0.438
|
0.284
|
0.105
|
0.469
|
0.184
|
0.165
|
0.217
|
0.016
|
0.114
|
0.466
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
— | — | — |
XP_065683736.1 zinc finger BED domain-containing protein 4-like [Hydra vulgaris]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.903|GO:0110165_0.897|GO:0005622_0.854|GO:0003674_0.826|GO:0016020_0.815|GO:0005737_0.795|GO:0043226_0.789|GO:0005488_0.767|GO:0043229_0.766|GO:0005515_0.747|GO:0043227_0.746|GO:0043231_0.711|GO:0042802_0.673|GO:0005634_0.613|GO:0031974_0.581|GO:0043233_0.581|GO:0070013_0.581|GO:0031981_0.573|GO:0005654_0.560
|
IPR012337+34-251+|IPR052035+14-152+
|
— | — | — |
PTHR46481+14-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
32059.180
|
8.778
|
9.500
|
30.576
|
8.993
|
52.518
|
47.482
|
17.626
|
12.950
|
41.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
159.619
|
15.813
|
27.657
|
20.650
|
16.791
|
19.554
|
7.917
|
63.923
|
101.042
|
557.938
|
362.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
— | — | — | — |
-1.299
|
1.605
|
-2.875
|
— | — | — | — | — |
No JSON data available for plots.