Hg_chrom9_TN10mRNA_16589
Organism: Heterodera glycines Gene Locus: chr9:260163-262019 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.444 | 0.178 | 0.416 | 1.316 | 1.145 | 1.174 | 1.091 | 2.672 | 1.187 | 0.928 | 1.272 | 0.449 | 1.272 | 1.028 | 1.558 | 0.981 | 0.751 | 1.272 | 1.762 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.732
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.865
|
0.426
|
0.519
|
0.173
|
0.009
|
0.081
|
0.154
|
0.066
|
0.380
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004871
|
2.000
|
1.000
|
Hsc_gene_21427.t1
|
Hsc_gene_21427.t1;Hsc_gene_21427.t2
|
— |
Q69BJ7.1 Cytochrome b-c1 complex subunit Rieske, mitochondrial [Saimiri sciureus]
|
KAF7637666.1 Cytochrome b-c1 complex subunit Rieske, mitochondrial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008121|GO:0016020|GO:0051537
|
GO:0005575_0.894|GO:0110165_0.888|GO:0016020_0.774|GO:0005622_0.770|GO:0005737_0.722|GO:0043226_0.713|GO:0043229_0.697|GO:0043227_0.690|GO:0043231_0.683|GO:0008150_0.616|GO:0009987_0.544|GO:0003674_0.538|GO:0005739_0.521
|
IPR005805+69-80_91-103+|IPR006317+17-109+|IPR014349+16-109+|IPR017941+34-102_64-103+|IPR036922+5-119_15-102+
|
— |
PF00355+64-103+Rieske_[2Fe-2S]_domain
|
G3DSA:2.102.10.10:FF:000001+8-125+Cytochrome_b-c1_complex_subunit_Rieske,_mitochondrial
|
PTHR10134+16-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-131
|
8uca_3P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
14929.280
|
10.056
|
12.500
|
30.534
|
14.504
|
47.328
|
52.672
|
21.374
|
9.160
|
45.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
155.951
|
209.124
|
116.727
|
120.102
|
140.157
|
110.765
|
150.086
|
179.064
|
6.515
|
292.638
|
170.014
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.072
|
-0.937
|
— | — |
-0.326
|
0.448
|
0.589
|
— |
-5.678
|
4.475
|
— | — | — |
No JSON data available for plots.