Hg_chrom9_TN10mRNA_16592
Organism: Heterodera glycines Gene Locus: chr9:287584-288139 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.219 | 0.439 | 1.887 | 0.0 | 1.572 | 1.451 | 1.235 | 2.358 | 1.258 | 0.637 | 1.144 | 1.11 | 2.358 | 1.089 | 0.578 | 0.674 | 0.464 | 1.286 | 0.726 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15682
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.731
|
0.057
|
0.619
|
0.533
|
0.142
|
0.129
|
0.035
|
0.071
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004873
|
2.000
|
1.000
|
Hsc_gene_21409.t1
|
Hsc_gene_21409.t1
|
— |
Q68W05.1 Probable monothiol glutaredoxin 2 [Rickettsia typhi str. Wilmington]
|
KAF7635728.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.875|GO:0110165_0.861|GO:0005622_0.763|GO:0008150_0.745|GO:0005737_0.736|GO:0043226_0.626|GO:0043229_0.615|GO:0016020_0.614|GO:0003674_0.544|GO:0043227_0.544|GO:0043231_0.540|GO:0009987_0.512
|
IPR002109+11-54+|IPR004480+9-75+|IPR036249+9-77+
|
— |
PF00462+11-54+Glutaredoxin
|
— |
PTHR10293+9-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
76-106
|
1.000
|
1-75
|
2mmz_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
12079.420
|
4.513
|
-7.500
|
34.906
|
16.038
|
50.000
|
50.000
|
15.094
|
19.811
|
46.226
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
248.074
|
17.547
|
22.631
|
32.791
|
38.256
|
23.122
|
74.220
|
40.420
|
682.910
|
479.772
|
566.831
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.766
|
0.643
|
— |
-0.712
|
1.693
|
0.703
|
1.020
|
— |
-4.288
|
-3.521
|
— | — |
No JSON data available for plots.