Hg_chrom9_TN10mRNA_16593
Organism: Heterodera glycines Gene Locus: chr9:289008-292549 Feature type: polypeptideProtein Sequence
Length: 680
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 1.026 | 1.07 | 0.609 | 1.176 | 1.131 | 0.613 | 1.25 | 1.078 | 1.471 | 0.958 | 1.73 | 1.511 | 0.933 | 1.08 | 0.819 | 0.916 | 0.958 | 0.566 | 0.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15683
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.320
|
0.022
|
0.452
|
0.138
|
0.191
|
0.087
|
0.138
|
0.193
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004866
|
2.000
|
1.000
|
Hsc_gene_21440.t1
|
Hsc_gene_21440.t1
|
— | — |
KAI1717830.1 RZZ complex, subunit zwilch domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007093|GO:1990423
|
GO:0008150_0.951|GO:0005575_0.912|GO:0110165_0.903|GO:0009987_0.893|GO:0005622_0.850|GO:0065007_0.838|GO:0050789_0.832|GO:0050794_0.808|GO:0043226_0.788|GO:0043229_0.768|GO:0071840_0.761|GO:0016043_0.754|GO:0051179_0.753|GO:0048518_0.741|GO:0048522_0.727|GO:0051641_0.714|GO:0006996_0.709|GO:0032879_0.699|GO:0044085_0.697|GO:0033036_0.696|GO:0070727_0.696|GO:0008104_0.694|GO:0022607_0.691|GO:0007010_0.686|GO:0007049_0.683|GO:0022402_0.683|GO:0060341_0.683|GO:0000280_0.682|GO:0007017_0.682|GO:0048285_0.682|GO:0032880_0.681|GO:0043933_0.680|GO:0033365_0.679|GO:0065003_0.679|GO:0070925_0.679|GO:0000226_0.678|GO:0051726_0.678|GO:0000278_0.677|GO:0140014_0.677|GO:1903047_0.677|GO:0010564_0.676|GO:0051276_0.675|GO:1903829_0.675|GO:0007059_0.674|GO:0140694_0.674|GO:0098813_0.673|GO:0000022_0.670|GO:0000070_0.670|GO:0000073_0.670|GO:0000087_0.670|GO:0000088_0.670|GO:0000279_0.670|GO:0000819_0.670|GO:0007051_0.670|GO:0007052_0.670|GO:0010695_0.670|GO:0010696_0.670|GO:0022403_0.670|GO:0031023_0.670|GO:0034501_0.670|GO:0034502_0.670|GO:0034508_0.670|GO:0044848_0.670|GO:0045787_0.670|GO:0051225_0.670|GO:0051231_0.670|GO:0051300_0.670|GO:0051324_0.670|GO:0051382_0.670|GO:0051383_0.670|GO:0061804_0.670|GO:0065004_0.670|GO:0071459_0.670|GO:0071824_0.670|GO:0090068_0.670|GO:0090307_0.670|GO:0098763_0.670|GO:0110100_0.670|GO:1902850_0.670|GO:1903083_0.670|GO:1903394_0.670|GO:1905047_0.670|GO:1905340_0.670|GO:1905342_0.670|GO:0032991_0.645|GO:0043228_0.623|GO:0043232_0.623|GO:0099080_0.580|GO:0005694_0.551|GO:0000775_0.540|GO:0000776_0.540|GO:0000779_0.540|GO:0000793_0.540|GO:0098687_0.540|GO:1990423_0.540
|
IPR018630+295-529_353-484+
|
— |
PF09817+353-484+RZZ_complex,_subunit_zwilch
|
— |
PTHR15995+295-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-680
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
76559.900
|
6.461
|
-0.500
|
27.059
|
10.588
|
47.206
|
52.794
|
14.118
|
12.941
|
47.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
917.078
|
278.344
|
362.433
|
964.280
|
1626.304
|
1995.235
|
2668.735
|
973.219
|
48.652
|
650.020
|
392.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.656
|
1.520
|
0.722
|
0.310
|
0.430
|
-1.151
|
1.603
|
-3.869
|
4.514
|
— | — | — |
No JSON data available for plots.