Hg_chrom9_TN10mRNA_16594
Organism: Heterodera glycines Gene Locus: chr9:293551-295100 Feature type: polypeptideProtein Sequence
Length: 203
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.146 | 1.146 | 1.164 | 0.34 | 0.903 | 0.632 | 0.704 | 1.232 | 1.423 | 1.065 | 0.896 | 2.898 | 1.368 | 0.568 | 1.307 | 0.915 | 0.727 | 0.746 | 1.516 | 1.304 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15684
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.639
|
0.198
|
0.035
|
0.674
|
0.046
|
0.048
|
0.047
|
0.007
|
0.057
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012436
|
1.000
|
1.000
|
Hsc_gene_21439.t1
|
Hsc_gene_21439.t1
|
— |
P91477.2 Proteasome subunit beta type-2 [Caenorhabditis elegans]
|
KAI1707962.1 proteasome subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0051603
|
GO:0005575_0.803|GO:0110165_0.790|GO:0005622_0.736|GO:0016020_0.633|GO:0043226_0.599|GO:0043229_0.596|GO:0005737_0.576|GO:0043227_0.566|GO:0008150_0.564|GO:0043231_0.554|GO:0032991_0.511
|
IPR001353+5-187+|IPR029055+3-197_6-195+|IPR050115+5-172+
|
— |
PF00227+5-187+Proteasome_subunit
|
— |
PTHR11599+5-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-203
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
23177.580
|
7.903
|
3.500
|
26.601
|
13.793
|
44.828
|
55.172
|
14.778
|
11.823
|
46.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2349.806
|
966.080
|
1780.348
|
3282.546
|
3813.492
|
2848.667
|
2050.355
|
2005.042
|
1816.644
|
2637.969
|
2285.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
1.627
|
0.991
|
0.184
|
-0.406
|
-0.464
|
-0.612
|
— | — | — | — | — | — |
No JSON data available for plots.