Hg_chrom9_TN10mRNA_16595
Organism: Heterodera glycines Gene Locus: chr9:295287-299040 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 1.409 | 0.93 | 0.849 | 1.231 | 1.117 | 0.97 | 1.989 | 0.926 | 1.203 | 0.689 | 1.448 | 1.263 | 0.801 | 0.889 | 0.595 | 0.776 | 1.32 | 0.583 | 0.836 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.453
|
0.318
|
0.015
|
0.782
|
0.210
|
0.381
|
0.121
|
0.024
|
0.081
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001384
|
4.000
|
1.000
|
Hsc_gene_21438.t1
|
Hsc_gene_21438.t1
|
— |
I6LDA6.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Onchocerca volvulus]
|
KAH7729568.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like protein [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004619|GO:0005737|GO:0006007|GO:0030145|GO:0046872
|
GO:0003674_0.832|GO:0008150_0.814|GO:0003824_0.739|GO:0004619_0.585|GO:0016853_0.585|GO:0016866_0.585|GO:0016868_0.585|GO:0046537_0.549|GO:0005575_0.501
|
IPR005995+3-526_6-523_9-523_9-524_10-523+|IPR006124+10-511+|IPR011258+86-301+|IPR017850+9-523_12-521+|IPR036646+81-312_81-314+
|
— |
PF01676+10-511+Metalloenzyme_superfamily|PF06415+86-301+BPG-independent_PGAM_N-terminus_(iPGM_N)
|
G3DSA:3.40.1450.10:FF:000002+81-317+2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase
|
PTHR31637+6-523+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
523-528
|
1.000
|
1-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
58536.370
|
5.753
|
-8.500
|
25.379
|
12.121
|
44.697
|
55.303
|
12.879
|
12.500
|
51.705
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkred
|
3784.022
|
1260.718
|
2220.238
|
5353.576
|
8537.827
|
5460.862
|
3340.264
|
2690.216
|
1732.009
|
4432.202
|
3274.976
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
1.949
|
1.378
|
0.641
|
-0.630
|
-0.699
|
-1.126
|
0.455
|
-1.467
|
1.799
|
— | — | — |
No JSON data available for plots.