Hg_chrom9_TN10mRNA_16597
Organism: Heterodera glycines Gene Locus: chr9:300704-301153 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 0.623 | 0.325 | 0.616 | 0.446 | 0.229 | 0.744 | 1.339 | 1.19 | 2.534 | 0.541 | 1.576 | 3.224 | 1.202 | 0.729 | 1.658 | 0.439 | 1.082 | 2.06 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15687
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.079
|
0.073
|
0.013
|
0.071
|
0.894
|
0.324
|
0.677
|
0.097
|
0.302
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012438
|
1.000
|
1.000
|
Hsc_gene_21436.t1
|
Hsc_gene_21436.t1
|
— |
P91390.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Caenorhabditis elegans]
|
KAH7727942.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006487|GO:0008250|GO:0016020
|
GO:0008150_0.927|GO:0009987_0.780|GO:0005575_0.717|GO:0110165_0.714|GO:0016020_0.689|GO:0071944_0.619|GO:0005886_0.616|GO:0005622_0.597|GO:0005737_0.597|GO:0043226_0.580|GO:0043227_0.580|GO:0043229_0.576|GO:0043231_0.571|GO:0005773_0.548|GO:0012505_0.502
|
IPR008814+5-110+
|
— |
PF05817+5-110+Oligosaccharyltransferase_subunit_Ribophorin_II
|
— |
PTHR12640+5-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
9ygy_P2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
12700.190
|
9.225
|
4.500
|
14.286
|
18.750
|
32.143
|
67.857
|
9.821
|
4.464
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
866.020
|
310.480
|
490.120
|
915.483
|
1328.469
|
1483.101
|
872.871
|
901.787
|
608.925
|
968.779
|
814.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.428
|
1.423
|
1.011
|
0.505
|
0.173
|
-0.758
|
-0.819
|
— | — | — | — | — | — |
No JSON data available for plots.