Hg_chrom9_TN10mRNA_16598
Organism: Heterodera glycines Gene Locus: chr9:301499-305584 Feature type: polypeptideProtein Sequence
Length: 580
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.561 | 1.002 | 1.003 | 1.724 | 1.034 | 0.796 | 0.718 | 1.034 | 1.648 | 1.398 | 0.653 | 1.217 | 1.149 | 0.829 | 1.232 | 1.059 | 1.131 | 0.862 | 1.194 | 0.811 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15688
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-20
|
0.906
|
0.951
|
1.000
|
1.000
|
0.102
|
0.057
|
0.014
|
0.198
|
0.405
|
0.628
|
0.401
|
0.052
|
0.742
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012439
|
1.000
|
1.000
|
Hsc_gene_21435.t1
|
Hsc_gene_21435.t1;Hsc_gene_21435.t2
|
— |
P36897.1 TGF-beta receptor type-1 [Homo sapiens]
|
KAI1715534.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004675|GO:0005524|GO:0006468|GO:0007178|GO:0016020
|
GO:0008150_0.941|GO:0009987_0.856|GO:0065007_0.854|GO:0050896_0.845|GO:0050789_0.840|GO:0050794_0.812|GO:0007154_0.762|GO:0032501_0.757|GO:0023052_0.755|GO:0005575_0.746|GO:0110165_0.746|GO:0051716_0.740|GO:0003674_0.725|GO:0007165_0.713|GO:0032502_0.689|GO:0048856_0.689|GO:0007275_0.655|GO:0071944_0.653|GO:0005886_0.650|GO:0016020_0.650|GO:0003824_0.643|GO:0007166_0.633|GO:0140096_0.622|GO:0048518_0.615|GO:0016740_0.613|GO:0060089_0.604|GO:0048522_0.600|GO:0038023_0.598|GO:0008152_0.593|GO:0044237_0.575|GO:0004888_0.563|GO:0043170_0.562|GO:0007167_0.556|GO:0005488_0.552|GO:0007178_0.541|GO:0030154_0.539|GO:0048869_0.539|GO:0048513_0.538|GO:0016772_0.537|GO:0009719_0.533|GO:0004672_0.523|GO:0016301_0.523|GO:0016773_0.523|GO:0048731_0.523|GO:0005515_0.518|GO:0044238_0.514|GO:0141091_0.513|GO:0009058_0.507
|
IPR000333+77-573+|IPR000472+61-153+|IPR000719+273-569_273-571+|IPR001245+274-563+|IPR008271+399-411+|IPR011009+264-563+|IPR017441+279-300+|IPR045860+59-155+
|
SM00220+273-571+
|
PF01064+61-153+Activin_types_I_and_II_receptor_domain|PF07714+274-563+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR23255+77-573+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-580
|
3kcf_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
65339.170
|
6.232
|
-2.000
|
24.138
|
10.517
|
45.862
|
54.138
|
12.414
|
11.724
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
781.762
|
1057.691
|
599.443
|
521.370
|
614.410
|
563.619
|
1251.560
|
609.348
|
426.217
|
1144.007
|
836.383
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.049
|
-1.158
|
— |
0.205
|
— |
1.161
|
— |
1.180
|
— | — | — | — | — |