Hg_chrom9_TN10mRNA_16600
Organism: Heterodera glycines Gene Locus: chr9:307050-308716 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.138 | 1.087 | 0.562 | 0.634 | 1.394 | 0.906 | 1.902 | 1.208 | 1.395 | 1.318 | 2.558 | 1.208 | 0.732 | 0.665 | 0.854 | 0.445 | 1.153 | 0.418 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.558
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.226
|
0.067
|
0.418
|
0.126
|
0.176
|
0.200
|
0.007
|
0.092
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012441
|
1.000
|
1.000
|
Hsc_gene_21433.t1
|
Hsc_gene_21433.t1
|
— |
Q2KIE4.1 Malignant T-cell-amplified sequence 1 [Bos taurus]
|
KAF7637523.1 PUA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0008150_0.927|GO:0005575_0.864|GO:0009987_0.864|GO:0008152_0.814|GO:0044237_0.785|GO:0044238_0.783|GO:0009058_0.776|GO:0043170_0.756|GO:0044249_0.750|GO:0009059_0.744|GO:0010467_0.732|GO:0110165_0.666|GO:0005622_0.626|GO:0065007_0.568|GO:0005737_0.560|GO:0050789_0.556|GO:0050794_0.540|GO:0019538_0.537
|
IPR002478+95-174_97-172+|IPR004521+67-175+|IPR015947+94-179+|IPR016437+1-183_1-184+|IPR041366+5-91+
|
SM00359+95-174+
|
PF01472+97-172+PUA_domain|PF17832+5-91+Pre-PUA-like_domain
|
G3DSA:3.10.400.20:FF:000001+1-183+Malignant_T-cell-amplified_sequence_1
|
PTHR22798+1-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
20425.740
|
9.087
|
7.500
|
25.543
|
10.870
|
44.565
|
55.435
|
15.761
|
9.783
|
47.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
1389.737
|
532.368
|
1057.500
|
1108.024
|
911.202
|
693.381
|
1009.635
|
705.647
|
3341.456
|
1317.350
|
2184.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
0.920
|
0.176
|
-0.314
|
-0.380
|
0.554
|
— |
0.659
|
— | — | — | — | — |
No JSON data available for plots.