Hg_chrom9_TN10mRNA_16607
Organism: Heterodera glycines Gene Locus: chr9:345709-350153 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 0.871 | 0.778 | 1.106 | 0.713 | 2.4 | 1.05 | 1.738 | 0.535 | 1.229 | 0.851 | 1.887 | 1.337 | 0.72 | 1.419 | 1.031 | 0.701 | 0.729 | 1.645 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15697
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,KRDVHDLLLLRHHSLSRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.174
|
0.005
|
0.330
|
0.120
|
0.048
|
0.072
|
0.071
|
0.061
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012447
|
1.000
|
1.000
|
Hsc_gene_21424.t1
|
Hsc_gene_21424.t1
|
— | — |
ADW77538.1 SPRY domain SOCS box-containing protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.961|GO:0009987_0.928|GO:0005575_0.912|GO:0110165_0.912|GO:0065007_0.911|GO:0050789_0.901|GO:0003674_0.893|GO:0050794_0.887|GO:0032501_0.862|GO:0005488_0.859|GO:0016020_0.841|GO:0032502_0.837|GO:0048856_0.837|GO:0005622_0.836|GO:0050896_0.832|GO:0051716_0.805|GO:0008152_0.803|GO:0043170_0.803|GO:0048518_0.803|GO:0043226_0.797|GO:0044237_0.794|GO:0023052_0.792|GO:0007154_0.791|GO:0009058_0.791|GO:0044238_0.791|GO:0019222_0.788|GO:0043229_0.787|GO:0048522_0.785|GO:0030154_0.782|GO:0031323_0.782|GO:0048519_0.782|GO:0048869_0.782|GO:0009059_0.779|GO:0044249_0.779|GO:0005515_0.774|GO:0010467_0.772|GO:0060255_0.772|GO:0007165_0.769|GO:0048523_0.762|GO:0009889_0.759|GO:0048513_0.757|GO:0031326_0.756|GO:0043227_0.753|GO:0010556_0.752|GO:0010646_0.748|GO:0010468_0.747|GO:0023051_0.743|GO:0009893_0.741|GO:0051239_0.740|GO:0031325_0.739|GO:0048583_0.739|GO:0010604_0.733|GO:0009966_0.732|GO:0006950_0.730|GO:0019538_0.730|GO:0043231_0.730|GO:0009891_0.728|GO:0050793_0.723|GO:0031328_0.722|GO:0009888_0.721|GO:0010557_0.719|GO:0045595_0.708|GO:0043412_0.706|GO:0048584_0.706|GO:0009605_0.704|GO:0035556_0.703|GO:0051240_0.703|GO:1902531_0.703|GO:0036211_0.702|GO:0002376_0.701|GO:0044419_0.697|GO:0051241_0.697|GO:0010628_0.695|GO:0010648_0.695|GO:0009056_0.694|GO:0009968_0.694|GO:0023057_0.694|GO:0048585_0.694|GO:0080134_0.694|GO:0009607_0.693|GO:0043207_0.693|GO:0051093_0.693|GO:0051707_0.693|GO:0006952_0.691|GO:0009057_0.690|GO:0005737_0.689|GO:0002682_0.687|GO:0098542_0.685|GO:0045596_0.684|GO:0002684_0.683|GO:0006508_0.683|GO:0006955_0.683|GO:0031347_0.682|GO:0032101_0.682|GO:0016567_0.681|GO:0030163_0.681|GO:0031349_0.681|GO:0032103_0.681|GO:0032446_0.681|GO:0043687_0.681|GO:0045087_0.681|GO:0070647_0.681|GO:0140546_0.681|GO:0001816_0.680|GO:0001817_0.680|GO:0050776_0.680|GO:0050778_0.680|GO:0002683_0.679|GO:0002831_0.679|GO:0048762_0.679|GO:0060485_0.679|GO:0000209_0.678|GO:0002833_0.678|GO:1902532_0.678|GO:0002253_0.677|GO:0002757_0.677|GO:0002764_0.677|GO:0045088_0.677|GO:0045089_0.677|GO:0001819_0.676|GO:0051603_0.676|GO:0002218_0.675|GO:0002758_0.675|GO:0010498_0.675|GO:0030522_0.675|GO:0043632_0.675|GO:0002221_0.674|GO:0006511_0.674|GO:0019941_0.674|GO:0005634_0.671|GO:0001837_0.670|GO:0002753_0.670|GO:0010717_0.670|GO:0010719_0.670|GO:0039531_0.670|GO:0039532_0.670|GO:0043161_0.670|GO:0062207_0.670|GO:0070936_0.670|GO:0140896_0.670|GO:0160049_0.670|GO:0030674_0.662|GO:0060090_0.662|GO:0140767_0.650|GO:1990756_0.650|GO:0032991_0.635|GO:0005829_0.582|GO:1902494_0.559|GO:1990234_0.549|GO:0140535_0.548|GO:0000151_0.546|GO:0031461_0.540|GO:0031466_0.540
|
IPR001870+13-214+|IPR003877+78-200+|IPR013320+27-208+|IPR035754+28-230+|IPR043136+34-228+|IPR050672+26-233+
|
— |
PF00622+78-200+SPRY_domain
|
— |
PTHR12245+26-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-374
|
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
42274.120
|
9.592
|
21.500
|
24.599
|
12.299
|
49.198
|
50.802
|
16.043
|
8.556
|
46.791
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1621.952
|
2496.391
|
2351.208
|
939.756
|
366.199
|
1511.308
|
631.091
|
1349.227
|
2923.638
|
1286.370
|
1988.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.315
|
-1.547
|
-1.215
|
-1.391
|
2.059
|
-1.250
|
— |
-0.956
|
— |
-1.474
|
— | — | — |
No JSON data available for plots.