Hg_chrom9_TN10mRNA_16612
Organism: Heterodera glycines Gene Locus: chr9:376709-377733 Feature type: polypeptideProtein Sequence
Length: 104
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.23 | 0.671 | 1.573 | 0.0 | 1.603 | 1.233 | 1.374 | 0.481 | 0.641 | 0.78 | 1.02 | 1.697 | 0.801 | 0.37 | 0.981 | 0.687 | 0.788 | 1.457 | 0.0 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15702
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.729
|
0.175
|
0.040
|
0.521
|
0.197
|
0.204
|
0.113
|
0.010
|
0.139
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000363
|
4.000
|
4.000
|
Hsc_gene_12179.t1;Hsc_gene_21419.t1;Hsc_gene_5605.t1;Hsc_gene_7155.t1
|
Hsc_gene_21419.t1;Hsc_gene_7155.t1
|
— |
P55853.1 Small ubiquitin-related modifier [Caenorhabditis elegans]
|
KAI3410081.1 C4-methyl sterol oxidase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.906|GO:0009987_0.737|GO:0005575_0.710|GO:0110165_0.704|GO:0003674_0.676|GO:0005622_0.643|GO:0008152_0.589|GO:0044238_0.580|GO:0043170_0.578|GO:0043226_0.555|GO:0016020_0.550|GO:0043229_0.535|GO:0005488_0.529|GO:0019538_0.527|GO:0065007_0.520
|
IPR000626+22-99_24-95+|IPR022617+24-93+|IPR029071+13-100+|IPR046332+23-98+
|
SM00213+24-95+
|
PF11976+24-93+Ubiquitin-2_like_Rad60_SUMO-like
|
G3DSA:3.10.20.90:FF:000280+6-99+Small_ubiquitin-related_modifier
|
PTHR10562+14-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-104
|
5xqm_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
11242.440
|
4.360
|
-6.500
|
30.769
|
7.692
|
48.077
|
51.923
|
12.500
|
18.269
|
54.808
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
990.921
|
639.391
|
771.124
|
1422.930
|
1621.405
|
1188.902
|
883.736
|
661.987
|
651.617
|
1150.513
|
936.700
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.017
|
0.992
|
0.156
|
-0.432
|
-0.416
|
-0.948
|
0.560
|
— | — | — | — | — |
No JSON data available for plots.