Hg_chrom9_TN10mRNA_16613
Organism: Heterodera glycines Gene Locus: chr9:378507-379128 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.207 | 1.097 | 1.029 | 0.0 | 0.472 | 1.209 | 0.562 | 1.415 | 0.839 | 1.147 | 0.858 | 2.22 | 1.834 | 0.907 | 1.348 | 0.809 | 1.083 | 1.144 | 0.726 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15703
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.090
|
0.956
|
0.033
|
0.145
|
0.048
|
0.024
|
0.020
|
0.059
|
0.054
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012451
|
1.000
|
1.000
|
Hsc_gene_20153.t1
|
Hsc_gene_20153.t1;Hsc_gene_21427.t1;Hsc_gene_21427.t2
|
— | — |
KAI6234575.1 Cytochrome b-c1 complex subunit Rieske, mitochondrial [Aphelenchoides fujianensis]
|
PPD93037
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008121
|
GO:0005575_0.923|GO:0110165_0.911|GO:0016020_0.818|GO:0005622_0.794|GO:0005737_0.766|GO:0043226_0.762|GO:0043229_0.741|GO:0043227_0.716|GO:0043231_0.704|GO:0005739_0.567
|
IPR004192+23-84+|IPR037008+22-84+
|
— |
PF02921+23-84+Ubiquinol_cytochrome_reductase_transmembrane_region
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-106
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
12021.820
|
10.095
|
5.500
|
23.585
|
14.151
|
45.283
|
54.717
|
15.094
|
8.491
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
252.288
|
140.996
|
308.399
|
342.626
|
556.669
|
487.192
|
437.565
|
571.962
|
48.979
|
0.000
|
20.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
1.144
|
0.262
|
0.668
|
— | — | — |
-0.243
|
— | — |
8.513
|
— | — |
No JSON data available for plots.