Hg_chrom9_TN10mRNA_16615
Organism: Heterodera glycines Gene Locus: chr9:385349-385979 Feature type: polypeptideProtein Sequence
Length: 84
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 2.492 | 0.433 | 0.821 | 1.389 | 0.611 | 1.276 | 0.595 | 1.852 | 1.448 | 0.722 | 2.801 | 0.661 | 0.916 | 0.486 | 0.51 | 0.976 | 0.541 | 1.832 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.422
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.107
|
0.007
|
0.656
|
0.158
|
0.163
|
0.141
|
0.001
|
0.054
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004874
|
2.000
|
1.000
|
Hsc_gene_21401.t1
|
Hsc_gene_21401.t1
|
— |
P62306.1 Small nuclear ribonucleoprotein F [Homo sapiens]
|
KAI1722928.1 LSM domain-containing protein [Ditylenchus destructor];KAI1723362.1 LSM domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0000398|GO:0003723|GO:0005681
|
GO:0005575_0.889|GO:0110165_0.877|GO:0008150_0.818|GO:0005622_0.778|GO:0016020_0.744|GO:0009987_0.742|GO:0043226_0.717|GO:0043229_0.708|GO:0043227_0.678|GO:0043231_0.675|GO:0032991_0.644|GO:0005634_0.585|GO:0008152_0.565|GO:0043170_0.555|GO:0044237_0.554|GO:0044238_0.552|GO:0009058_0.551|GO:0009059_0.545|GO:0010467_0.545|GO:0044249_0.545|GO:0120114_0.545|GO:0006139_0.532|GO:0034654_0.526|GO:0016070_0.521|GO:0090304_0.521|GO:0032774_0.519|GO:0141187_0.519|GO:0003674_0.516|GO:0016071_0.502
|
IPR001163+13-77_13-78+|IPR010920+11-81+|IPR016487+8-81+|IPR034100+10-78+|IPR047575+10-82+
|
SM00651+13-78+
|
PF01423+13-77+LSM_domain
|
— |
PTHR11021+8-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-84
|
4pjo_t
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
9345.720
|
4.624
|
-2.500
|
19.048
|
9.524
|
41.667
|
58.333
|
8.333
|
10.714
|
48.810
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
570.290
|
341.927
|
392.109
|
782.251
|
790.689
|
512.429
|
544.433
|
330.837
|
618.511
|
645.631
|
634.009
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.057
|
1.107
|
— |
-0.611
|
— |
-0.739
|
0.863
|
— | — | — | — | — |
No JSON data available for plots.