Hg_chrom9_TN10mRNA_16617
Organism: Heterodera glycines Gene Locus: chr9:389416-390595 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.501 | 0.334 | 0.522 | 3.3 | 1.116 | 2.208 | 0.797 | 2.153 | 0.744 | 0.841 | 0.87 | 2.252 | 0.532 | 1.012 | 1.074 | 0.957 | 0.549 | 1.377 | 2.576 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15707
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.250
|
0.449
|
0.024
|
0.357
|
0.065
|
0.036
|
0.169
|
0.069
|
0.155
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001444
|
2.000
|
3.000
|
Hsc_gene_21399.t1;Hsc_gene_21399.t2;Hsc_gene_21399.t3
|
— | — | — |
OAD58079.1 A disintegrin and metalloproteinase with thrombospondin motifs 9 [Eufriesea mexicana]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.815|GO:0005575_0.701|GO:0110165_0.688|GO:0009987_0.648|GO:0032501_0.558|GO:0003674_0.544|GO:0065007_0.518|GO:0032502_0.514
|
IPR000884+35-97_95-148_99-148+|IPR036383+37-97_41-96_92-140_98-149+|IPR050439+2-163+
|
SM00209+35-97_99-148+
|
PF19030+42-96_99-135+Thrombospondin_type_1_domain
|
— |
PTHR13723+2-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
23729.550
|
7.723
|
7.500
|
24.880
|
11.005
|
44.976
|
55.024
|
15.311
|
9.569
|
49.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
20.739
|
7.138
|
15.161
|
26.671
|
48.588
|
36.779
|
72.610
|
30.595
|
0.000
|
1.656
|
0.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
1.766
|
0.929
|
0.833
|
— |
0.991
|
— |
1.390
|
— |
5.594
|
— | — | — |
No JSON data available for plots.