Hg_chrom9_TN10mRNA_16618
Organism: Heterodera glycines Gene Locus: chr9:404311-406503 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 1.254 | 0.981 | 1.288 | 1.314 | 0.638 | 0.939 | 1.66 | 0.645 | 0.561 | 0.566 | 1.464 | 1.614 | 0.718 | 2.371 | 1.186 | 0.68 | 0.566 | 1.596 | 1.464 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15708
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR
|
— | — |
49-105
|
0.996
|
— | — |
0.000
|
— | — |
0.766
|
0.142
|
0.018
|
0.406
|
0.060
|
0.016
|
0.020
|
0.008
|
0.017
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000754
|
5.000
|
1.000
|
Hsc_gene_21414.t1
|
Hsc_gene_21414.t1
|
— |
A1A4K8.1 Splicing factor U2AF 35 kDa subunit [Bos taurus]
|
KAI3414245.1 Splicing factor U2AF 26 kDa subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0003676|GO:0003723|GO:0046872|GO:0089701
|
GO:0005575_0.822|GO:0110165_0.820|GO:0005622_0.746|GO:0008150_0.715|GO:0016020_0.695|GO:0043226_0.693|GO:0043229_0.679|GO:0043227_0.661|GO:0043231_0.647|GO:0005634_0.616|GO:0003674_0.577|GO:0009987_0.505
|
IPR000571+23-51_24-50_25-49_154-180_154-181+|IPR009145+13-217_29-48_109-131_136-160_171-183+|IPR012677+81-170+|IPR035979+87-160+
|
SM00356+24-50_154-180+
|
PF00642+25-49+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)
|
— |
PTHR12620+13-217+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-241
|
1jmt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
28101.230
|
8.393
|
9.000
|
31.950
|
16.183
|
52.282
|
47.718
|
18.672
|
13.278
|
48.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
243.562
|
503.101
|
153.540
|
176.251
|
196.696
|
154.819
|
150.249
|
174.636
|
273.912
|
294.165
|
285.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.941
|
-1.650
|
0.307
|
— |
-0.331
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.