Hg_chrom9_TN10mRNA_16619
Organism: Heterodera glycines Gene Locus: chr9:406674-409838 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.704 | 1.285 | 1.196 | 1.089 | 0.526 | 0.742 | 0.783 | 1.711 | 1.228 | 0.605 | 0.678 | 1.238 | 1.023 | 1.012 | 2.041 | 0.789 | 1.381 | 1.236 | 1.012 | 1.084 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15709
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KVKK
|
41-63
|
0.991
|
22-62
|
0.896
|
— | — |
0.000
|
— | — |
0.570
|
0.234
|
0.149
|
0.425
|
0.103
|
0.053
|
0.052
|
0.088
|
0.114
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P11493.2 Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [Sus scrofa]
|
KAI3414260.1 Serine/threonine-protein phosphatase 2A catalytic subunit [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0016787
|
GO:0008150_0.832|GO:0005575_0.821|GO:0110165_0.763|GO:0009987_0.731|GO:0005622_0.685|GO:0003674_0.650|GO:0016020_0.573|GO:0065007_0.555|GO:0050789_0.542|GO:0043226_0.539|GO:0008152_0.535|GO:0043229_0.501
|
IPR006186+144-347_186-213_219-243_220-225+|IPR013845+131-170+|IPR029052+196-249_199-347_250-359+|IPR038237+134-173+|IPR041982+89-126+|IPR047129+163-242+
|
SM00156+144-347+
|
PF00900+131-170+Ribosomal_family_S4e
|
G3DSA:2.40.50.740:FF:000001+134-173+40S_ribosomal_protein_S4
|
PTHR45619+163-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
357-380
|
1.000
|
1-356
|
8uo5_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
43150.980
|
9.739
|
24.500
|
27.632
|
12.105
|
50.000
|
50.000
|
17.895
|
9.737
|
55.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
362.798
|
45.484
|
77.469
|
94.751
|
215.824
|
152.552
|
302.005
|
144.438
|
24.497
|
1181.671
|
685.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
0.921
|
0.402
|
1.156
|
-0.487
|
0.998
|
— |
1.210
|
-5.784
|
— | — | — | — |
No JSON data available for plots.