Hg_chrom9_TN10mRNA_16622
Organism: Heterodera glycines Gene Locus: chr9:421166-421829 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 1.188 | 1.062 | 0.252 | 0.487 | 0.374 | 1.13 | 2.19 | 2.595 | 0.395 | 1.106 | 1.717 | 1.014 | 0.561 | 1.788 | 0.938 | 0.838 | 0.995 | 0.561 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15712
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PASKRIR,KRIRLSIAEERNRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.565
|
0.219
|
0.074
|
0.503
|
0.171
|
0.050
|
0.160
|
0.008
|
0.048
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001065
|
4.000
|
1.000
|
Hsc_gene_21386.t1
|
Hsc_gene_21368.t1;Hsc_gene_21386.t1;Hsc_gene_24003.t1;Hsc_gene_24003.t2
|
— |
P41042.2 Small ribosomal subunit protein eS4 [Drosophila melanogaster]
|
KAI3414259.1 40S ribosomal protein S4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.847|GO:0110165_0.834|GO:0005622_0.783|GO:0043226_0.678|GO:0043229_0.678|GO:0003674_0.657|GO:0005737_0.649|GO:0008150_0.550|GO:0043228_0.541|GO:0043232_0.541|GO:0005829_0.514|GO:0016020_0.509
|
IPR000876+30-135+|IPR014722+50-120+|IPR032277+87-134+|IPR041982+50-104+
|
— |
PF16121+87-134+40S_ribosomal_protein_S4_C-terminus
|
G3DSA:2.30.30.30:FF:000005+50-120+40S_ribosomal_protein_S4
|
PTHR11581+30-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
137-137
|
1.000
|
1-136
|
6xu8_AE
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
15066.360
|
10.960
|
13.000
|
29.197
|
10.219
|
47.445
|
52.555
|
20.438
|
8.759
|
51.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
99.023
|
66.447
|
70.747
|
81.040
|
101.539
|
82.496
|
152.238
|
98.277
|
81.155
|
127.564
|
107.674
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.306
|
0.292
|
— |
0.897
|
— |
0.778
|
— | — | — | — | — |
No JSON data available for plots.