Hg_chrom9_TN10mRNA_16626
Organism: Heterodera glycines Gene Locus: chr9:435787-442165 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.195 | 0.895 | 1.698 | 0.857 | 1.318 | 0.943 | 1.285 | 0.857 | 1.013 | 0.811 | 1.134 | 1.249 | 0.618 | 1.486 | 1.285 | 1.088 | 0.552 | 0.988 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15716
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PKPS
|
65-85
|
0.963
|
— | — | — | — |
0.001
|
— | — |
0.303
|
0.166
|
0.026
|
0.614
|
0.222
|
0.192
|
0.190
|
0.014
|
0.384
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_21411.t1;Hsc_gene_21411.t2
|
— |
Q91ZT5.1 FYVE, RhoGEF and PH domain-containing protein 4 [Mus musculus]
|
KAI3414244.1 putative GDP-GTP exchange factor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0009987_0.904|GO:0005575_0.902|GO:0110165_0.901|GO:0005622_0.792|GO:0065007_0.663|GO:0050789_0.650|GO:0050794_0.640|GO:0016020_0.620|GO:0050896_0.591|GO:0051716_0.555|GO:0071944_0.548|GO:0023052_0.537|GO:0007154_0.532|GO:0007165_0.516|GO:0005886_0.512
|
IPR001849+27-142_266-358_267-360_284-353+|IPR011011+135-218+|IPR011993+19-134_269-358+|IPR013083+151-227+|IPR017455+166-218+|IPR051092+20-324+
|
SM00233+27-142_267-360+
|
PF00169+284-353+PH_domain
|
— |
PTHR12673+20-324+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-467
|
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
51618.180
|
8.457
|
18.000
|
25.268
|
10.064
|
51.178
|
48.822
|
15.203
|
10.064
|
53.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
226.930
|
167.334
|
271.400
|
334.803
|
378.178
|
411.615
|
330.976
|
401.331
|
58.586
|
88.015
|
75.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
0.864
|
0.411
|
— | — |
-0.304
|
— | — | — | — | — |
7.560
|
— |
No JSON data available for plots.