Hg_chrom9_TN10mRNA_16630
Organism: Heterodera glycines Gene Locus: chr9:450839-455740 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.831 | 0.938 | 1.232 | 0.265 | 1.119 | 0.709 | 1.786 | 2.116 | 0.644 | 1.082 | 0.467 | 1.433 | 0.839 | 2.187 | 0.737 | 0.976 | 1.443 | 0.916 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15720
|
— |
Hg_chrom9_TN10gene_15720
|
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRSVTSKCRTLSRRRAN
|
1-71
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.416
|
0.401
|
0.172
|
0.351
|
0.052
|
0.042
|
0.171
|
0.201
|
0.088
|
0.317
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001065
|
4.000
|
1.000
|
Hsc_gene_21386.t1
|
Hsc_gene_21368.t1;Hsc_gene_21386.t1;Hsc_gene_24003.t1;Hsc_gene_24003.t2
|
— |
Q4PMB3.1 Small ribosomal subunit protein eS4 [Ixodes scapularis]
|
KAI3414259.1 40S ribosomal protein S4 [Globodera pallida]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.846|GO:0110165_0.845|GO:0005622_0.718|GO:0003674_0.692|GO:0043226_0.614|GO:0043229_0.614|GO:0008150_0.584|GO:0005737_0.583|GO:0016020_0.506
|
IPR000876+78-187+|IPR013845+79-142+|IPR014722+148-196+|IPR038237+95-145+|IPR041982+148-185+
|
— |
PF00900+79-142+Ribosomal_family_S4e
|
G3DSA:2.40.50.740:FF:000001+95-145+40S_ribosomal_protein_S4
|
PTHR11581+78-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
6xu8_AE
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
28887.770
|
11.064
|
32.500
|
28.175
|
12.302
|
47.222
|
52.778
|
21.429
|
6.746
|
48.810
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
steelblue
|
876.024
|
616.833
|
782.004
|
910.635
|
1020.583
|
1131.213
|
1118.656
|
1025.706
|
493.356
|
985.475
|
774.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.425
|
0.328
|
0.132
|
0.164
|
— |
-0.248
|
0.270
|
— | — | — | — |
3.593
|
No JSON data available for plots.