Hg_chrom9_TN10mRNA_16636
Organism: Heterodera glycines Gene Locus: chr9:462691-468086 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.111 | 1.036 | 0.634 | 1.716 | 1.131 | 0.438 | 1.562 | 0.735 | 1.49 | 0.919 | 2.271 | 0.868 | 0.601 | 1.426 | 1.208 | 0.934 | 0.891 | 0.707 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15726
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRRK,RRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.341
|
0.262
|
0.041
|
0.769
|
0.081
|
0.275
|
0.152
|
0.079
|
0.532
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002532
|
2.000
|
2.000
|
Hsc_gene_21411.t1;Hsc_gene_21411.t2
|
Hsc_gene_21411.t1;Hsc_gene_21411.t2
|
— |
Q91ZT5.1 FYVE, RhoGEF and PH domain-containing protein 4 [Mus musculus]
|
KAI3414244.1 putative GDP-GTP exchange factor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085
|
GO:0008150_0.895|GO:0005575_0.875|GO:0110165_0.873|GO:0009987_0.849|GO:0005622_0.837|GO:0065007_0.690|GO:0050789_0.686|GO:0005737_0.655|GO:0050794_0.618|GO:0050896_0.585|GO:0051716_0.562|GO:0003674_0.553|GO:0005488_0.524|GO:0007154_0.509|GO:0005515_0.504|GO:0023052_0.504|GO:0016020_0.503
|
IPR000219+326-509_328-507_330-508_331-507+|IPR035899+315-528_320-528+|IPR051092+148-531+
|
SM00325+330-508+
|
PF00621+331-507+RhoGEF_domain
|
— |
PTHR12673+148-531+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68
|
1.000
|
69-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
62594.860
|
5.757
|
-7.500
|
32.169
|
9.375
|
55.515
|
44.485
|
16.176
|
15.993
|
44.669
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey60
|
413.830
|
157.273
|
253.633
|
247.067
|
267.344
|
324.726
|
291.579
|
332.319
|
640.262
|
627.583
|
633.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.460
|
0.515
|
— | — |
0.295
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.