Hg_chrom9_TN10mRNA_16638
Organism: Heterodera glycines Gene Locus: chr9:480366-481683 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.709 | 1.22 | 0.421 | 1.321 | 1.094 | 1.016 | 1.524 | 0.813 | 0.989 | 1.016 | 1.076 | 2.202 | 0.938 | 1.244 | 1.22 | 0.2 | 1.386 | 0.469 | 0.179 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15728
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-28
|
1.000
|
45-69
|
0.990
|
— | — |
0.000
|
— | — |
0.081
|
0.958
|
0.007
|
0.152
|
0.019
|
0.050
|
0.037
|
0.003
|
0.043
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004873
|
2.000
|
1.000
|
Hsc_gene_21409.t1
|
Hsc_gene_21409.t1
|
— |
Q9HDW8.1 Monothiol glutaredoxin-5, mitochondrial [Schizosaccharomyces pombe 972h-]
|
KAF7635728.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.856|GO:0110165_0.848|GO:0005622_0.770|GO:0005737_0.749|GO:0008150_0.743|GO:0043226_0.645|GO:0016020_0.640|GO:0043229_0.625|GO:0043227_0.570|GO:0043231_0.561|GO:0003674_0.556|GO:0009987_0.509
|
IPR002109+48-112+|IPR004480+27-133_37-132+|IPR033658+39-127+|IPR036249+36-135+
|
— |
PF00462+48-112+Glutaredoxin
|
G3DSA:3.40.30.10:FF:000005+38-137+Glutaredoxin_5
|
PTHR10293+27-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-164
|
1.000
|
1-133
|
5y4u_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
18252.650
|
6.338
|
-0.500
|
30.488
|
12.195
|
47.561
|
52.439
|
15.854
|
14.634
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
violet
|
600.259
|
302.201
|
453.685
|
687.923
|
876.784
|
690.967
|
665.457
|
384.365
|
624.337
|
634.864
|
630.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.356
|
1.050
|
0.710
|
0.318
|
-0.329
|
— |
-0.954
|
0.936
|
— | — | — | — | — |
No JSON data available for plots.