Hg_chrom9_TN10mRNA_16640
Organism: Heterodera glycines Gene Locus: chr9:488806-490672 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.6 | 0.427 | 2.002 | 0.063 | 0.398 | 0.988 | 0.677 | 2.11 | 0.612 | 0.347 | 3.225 | 0.54 | 1.07 | 2.893 | 0.15 | 0.682 | 0.391 | 0.25 | 0.141 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15730
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPDAKKSLFAKFKKS,RKKGKRFGSPASSKKRFRP,KKGKRFGSPASSKKRFRPK,KRFRPKSPKKIKSFFAKKK,KKKAALSSSKKPGAKKPFK,KKPGAKKPFKNPFAKFKKS,KKSGAAGSDKKPDAKKPFK,KKPDAKKPFKNPFAKFKKS,KKSGAAESDKKPDDKKPLK,PPLKKPGAAAASDTKPDDKKPIKNPSAKFKKPGAAALETKPDDKKPIKKPGAAALETKHDDKKPIKKPGAAASDMKPDDKKPIKKSPDDKKPIKKPGAAASDTKPDDKKPIKKPGAAALDTKPDDKKPIKKPGAAASDAKPDDKKPIKKPGAAALDTKPDDKKPIKKPGAAALDTKPDDKKPIKKPGAAALDTKPDDKKPIKKPGAAALDTKPDDKKPIK
|
20-44
|
0.895
|
— | — | — | — |
0.000
|
— | — |
0.617
|
0.093
|
0.053
|
0.469
|
0.098
|
0.088
|
0.091
|
0.012
|
0.297
|
0.581
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002533
|
2.000
|
2.000
|
Hsc_gene_15185.t1;Hsc_gene_23481.t1
|
— | — | — | — |
ULL18977
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-545
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
58748.010
|
10.543
|
58.500
|
39.633
|
9.174
|
52.477
|
47.523
|
26.239
|
13.394
|
56.330
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
110.007
|
10.194
|
24.930
|
42.251
|
123.596
|
381.831
|
83.259
|
398.186
|
0.691
|
81.672
|
46.966
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.056
|
1.916
|
0.874
|
1.519
|
1.642
|
-2.187
|
— |
-2.111
|
— |
5.774
|
— | — | — |
No JSON data available for plots.