Hg_chrom9_TN10mRNA_16641
Organism: Heterodera glycines Gene Locus: chr9:491314-492507 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.447 | 0.517 | 0.889 | 0.153 | 1.63 | 1.823 | 0.423 | 1.111 | 0.79 | 1.742 | 1.347 | 1.046 | 0.37 | 0.598 | 1.088 | 0.635 | 1.384 | 0.943 | 0.342 | 0.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15731
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKRLDLDVTKSRWKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.234
|
0.336
|
0.025
|
0.501
|
0.095
|
0.359
|
0.528
|
0.027
|
0.138
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012455
|
1.000
|
1.000
|
Hsc_gene_21406.t1
|
Hsc_gene_21406.t1
|
— |
Q6AYE2.1 Endophilin-B1 [Rattus norvegicus]
|
KAH7708445.1 Endophilin-related protein 1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005737
|
GO:0005575_0.926|GO:0110165_0.918|GO:0005622_0.893|GO:0016020_0.845|GO:0005737_0.810|GO:0008150_0.796|GO:0009987_0.764|GO:0043226_0.734|GO:0043229_0.720|GO:0065007_0.701|GO:0043227_0.675|GO:0043231_0.655|GO:0071840_0.637|GO:0016043_0.636|GO:0051179_0.632|GO:0051234_0.624|GO:0051641_0.609|GO:0050789_0.579|GO:0003674_0.566|GO:0005488_0.565|GO:0050794_0.557|GO:0005515_0.540|GO:0050896_0.519|GO:0051716_0.509|GO:0048518_0.501
|
IPR004148+3-224_4-223_16-225+|IPR027267+9-223_16-225+
|
SM00721+3-224+
|
PF03114+4-223+BAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
24943.550
|
6.986
|
1.500
|
31.111
|
4.889
|
53.333
|
46.667
|
16.444
|
14.667
|
45.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1656.635
|
8.571
|
29.523
|
53.022
|
169.977
|
4826.750
|
129.465
|
9464.235
|
0.691
|
1741.682
|
995.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.555
|
2.492
|
0.952
|
1.651
|
4.841
|
-5.208
|
0.858
|
-6.043
|
-11.085
|
6.102
|
— | — | — |
No JSON data available for plots.