Hg_chrom9_TN10mRNA_16643
Organism: Heterodera glycines Gene Locus: chr9:495844-500013 Feature type: polypeptideProtein Sequence
Length: 454
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.127 | 0.666 | 0.441 | 0.911 | 0.404 | 0.847 | 0.367 | 2.093 | 0.93 | 2.024 | 0.234 | 0.777 | 3.182 | 1.017 | 1.349 | 0.85 | 0.686 | 1.168 | 2.203 | 0.972 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15733
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.024
|
— | — |
0.115
|
0.251
|
0.011
|
0.087
|
0.909
|
0.276
|
0.624
|
0.006
|
0.153
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012457
|
1.000
|
1.000
|
Hsc_gene_21404.t1
|
— | — |
O88788.1 Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [Rattus norvegicus]
|
XP_042935549.1 alpha-1,2 glucosyltransferase, putative [Brugia malayi];VIO95241.1 alpha-1,2 glucosyltransferase, putative [Brugia malayi]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006488|GO:0106073
|
GO:0008150_0.841|GO:0009987_0.793|GO:0005575_0.695|GO:0110165_0.695|GO:0016020_0.665|GO:0071944_0.643|GO:0005886_0.642|GO:0003674_0.632|GO:0005622_0.563|GO:0005737_0.563|GO:0043226_0.527|GO:0043227_0.520|GO:0043229_0.517|GO:0003824_0.512|GO:0043231_0.512|GO:0005773_0.508
|
IPR016900+6-454_35-405_207-454+
|
— |
PF04922+35-405+DIE2/ALG10_family
|
— |
PTHR12989+207-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
52688.120
|
9.470
|
24.500
|
17.181
|
21.806
|
33.480
|
66.520
|
12.335
|
4.846
|
43.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
182.679
|
270.264
|
324.642
|
218.021
|
200.016
|
191.231
|
299.482
|
200.298
|
60.541
|
114.830
|
91.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.447
|
-0.465
|
— | — |
0.655
|
— |
0.720
|
— | — | — | — | — |
No JSON data available for plots.