Hg_chrom9_TN10mRNA_16644
Organism: Heterodera glycines Gene Locus: chr9:500232-502290 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.362 | 1.152 | 1.229 | 0.155 | 1.126 | 2.657 | 0.965 | 1.126 | 0.801 | 0.791 | 1.297 | 0.265 | 0.125 | 0.52 | 2.574 | 0.579 | 0.886 | 0.41 | 0.693 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAQLTYERLQAEKRAQR,RRHTAQPRLNRAQRKFKQK,QRRAKGGERKQRRHTAQPRLNRAQRKFK
|
23-44
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.846
|
0.216
|
0.002
|
0.139
|
0.025
|
0.042
|
0.100
|
0.001
|
0.042
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012458
|
1.000
|
1.000
|
Hsc_gene_21403.t1
|
— | — | — |
KAI1733205.1 rRNA processing domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013730+114-218_143-166_191-215+
|
— |
PF08524+114-218+rRNA_processing
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-222
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
25046.740
|
10.987
|
19.500
|
36.937
|
4.955
|
61.712
|
38.288
|
23.423
|
13.514
|
46.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgreen
|
1205.557
|
1280.463
|
1102.719
|
985.148
|
948.649
|
769.928
|
842.534
|
567.752
|
2611.202
|
879.464
|
1621.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.445
|
-0.515
|
— | — |
-0.286
|
— |
-0.547
|
0.714
|
1.469
|
-1.246
|
— | — | — |
No JSON data available for plots.