Hg_chrom9_TN10mRNA_16646
Organism: Heterodera glycines Gene Locus: chr9:508006-508673 Feature type: polypeptideProtein Sequence
Length: 84
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 2.215 | 0.433 | 0.821 | 1.389 | 0.611 | 1.276 | 0.595 | 2.116 | 1.609 | 0.722 | 2.801 | 0.331 | 0.916 | 0.486 | 0.51 | 0.976 | 0.541 | 1.832 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15736
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.644
|
0.096
|
0.009
|
0.645
|
0.193
|
0.216
|
0.173
|
0.002
|
0.048
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004874
|
2.000
|
1.000
|
Hsc_gene_21401.t1
|
Hsc_gene_21401.t1
|
— |
P62306.1 Small nuclear ribonucleoprotein F [Homo sapiens]
|
KAI1722928.1 LSM domain-containing protein [Ditylenchus destructor];KAI1723362.1 LSM domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0000398|GO:0003723|GO:0005681
|
GO:0005575_0.900|GO:0110165_0.886|GO:0008150_0.824|GO:0005622_0.781|GO:0016020_0.763|GO:0009987_0.752|GO:0043226_0.720|GO:0043229_0.710|GO:0043227_0.681|GO:0043231_0.678|GO:0032991_0.649|GO:0005634_0.577|GO:0008152_0.566|GO:0043170_0.558|GO:0044237_0.558|GO:0009058_0.556|GO:0044238_0.555|GO:0009059_0.550|GO:0010467_0.550|GO:0044249_0.550|GO:0120114_0.540|GO:0006139_0.536|GO:0034654_0.531|GO:0016070_0.525|GO:0090304_0.525|GO:0032774_0.524|GO:0141187_0.524|GO:0016071_0.510|GO:0000375_0.507|GO:0000377_0.507|GO:0000398_0.507|GO:0006396_0.507|GO:0006397_0.507|GO:0008380_0.507
|
IPR001163+13-77_13-78+|IPR010920+11-80+|IPR016487+8-81+|IPR034100+10-78+|IPR047575+10-82+
|
SM00651+13-78+
|
PF01423+13-77+LSM_domain
|
G3DSA:2.30.30.100:FF:000011+4-81+small_nuclear_ribonucleoprotein_F
|
PTHR11021+8-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-84
|
4pjo_t
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
9310.760
|
4.624
|
-2.500
|
19.048
|
8.333
|
40.476
|
59.524
|
8.333
|
10.714
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
730.183
|
379.113
|
361.645
|
750.568
|
788.469
|
509.746
|
555.008
|
334.847
|
949.175
|
1102.898
|
1037.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.299
|
0.848
|
1.164
|
— |
-0.614
|
— |
-0.713
|
0.872
|
— | — | — | — | — |
No JSON data available for plots.