Hg_chrom9_TN10mRNA_16648
Organism: Heterodera glycines Gene Locus: chr9:511101-512839 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 0.634 | 0.496 | 2.038 | 0.379 | 1.282 | 0.974 | 2.727 | 1.313 | 0.921 | 0.551 | 1.872 | 0.884 | 0.612 | 1.855 | 0.714 | 0.745 | 1.791 | 1.399 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
74-94
|
0.863
|
70-90
|
0.954
|
— | — |
0.000
|
— | — |
0.200
|
0.388
|
0.019
|
0.354
|
0.140
|
0.045
|
0.114
|
0.408
|
0.555
|
0.526
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001444
|
2.000
|
3.000
|
Hsc_gene_21399.t1;Hsc_gene_21399.t2;Hsc_gene_21399.t3
|
— | — | — |
KAI3417099.1 hypothetical protein GPALN_015604 [Globodera pallida]
|
No
|
-0.770
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0005575_0.737|GO:0110165_0.724|GO:0003674_0.713|GO:0003824_0.599|GO:0032502_0.582|GO:0009987_0.543|GO:0016787_0.535|GO:0140096_0.521|GO:0008233_0.517
|
IPR000884+92-144+|IPR036383+75-152_92-141+
|
— |
PF19030+96-148+Thrombospondin_type_1_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-220
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
24467.780
|
10.178
|
23.000
|
23.182
|
11.818
|
40.455
|
59.545
|
18.182
|
5.000
|
52.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
6.582
|
6.408
|
8.541
|
11.934
|
13.181
|
7.266
|
17.558
|
7.489
|
0.000
|
1.656
|
0.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.286
|
— |
1.380
|
— |
4.434
|
— | — | — |
No JSON data available for plots.