Hg_chrom9_TN10mRNA_16655
Organism: Heterodera glycines Gene Locus: chr9:524414-526270 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.326 | 0.797 | 0.454 | 1.243 | 1.912 | 0.574 | 2.632 | 1.267 | 1.778 | 0.598 | 1.032 | 1.218 | 0.675 | 0.985 | 0.815 | 0.503 | 0.665 | 1.012 | 1.032 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15744
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
18-38
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.386
|
0.225
|
0.010
|
0.681
|
0.203
|
0.422
|
0.400
|
0.010
|
0.167
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012461
|
1.000
|
1.000
|
Hsc_gene_21394.t1
|
Hsc_gene_21394.t1
|
— |
Q3T1J9.3 MOB kinase activator 1A [Rattus norvegicus]
|
KAI3414258.1 MOB kinase activator 1A [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.857|GO:0005622_0.830|GO:0008150_0.791|GO:0005737_0.741|GO:0009987_0.736|GO:0065007_0.663|GO:0050789_0.654|GO:0050794_0.638|GO:0016020_0.631|GO:0043226_0.556|GO:0043227_0.535|GO:0003674_0.519
|
IPR005301+19-210_32-204_35-204+|IPR036703+3-213_21-212+
|
SM01388+32-204+
|
PF03637+35-204+Mob1/phocein_family
|
— |
PTHR22599+19-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-228
|
1.000
|
1-227
|
5twh_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
26164.690
|
6.359
|
-1.000
|
25.877
|
14.474
|
47.807
|
52.193
|
14.035
|
11.842
|
41.228
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
yellow
|
763.143
|
517.976
|
727.858
|
659.400
|
687.679
|
671.789
|
604.228
|
822.487
|
987.345
|
838.959
|
902.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.262
|
0.211
|
— | — | — | — | — |
-0.303
|
— | — | — | — | — |
No JSON data available for plots.