Hg_chrom9_TN10mRNA_16656
Organism: Heterodera glycines Gene Locus: chr9:526494-531531 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 1.002 | 0.901 | 0.446 | 1.042 | 1.492 | 0.282 | 1.293 | 1.149 | 1.34 | 1.241 | 1.395 | 0.659 | 0.87 | 1.847 | 1.047 | 0.601 | 0.816 | 0.829 | 1.141 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15745
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRYQELKNIVIKAERR,RRNAVASQHPEDLQKLSKK,RRRDKTSPRQNVAEKKYSK,PPKRRRRDMAGQNVAETKRRRDRTPPRQNVAETKRRRDKTSPRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.929
|
0.049
|
0.003
|
0.151
|
0.025
|
0.015
|
0.039
|
0.007
|
0.034
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003558
|
2.000
|
1.000
|
Hsc_gene_21393.t1
|
Hsc_gene_20541.t1;Hsc_gene_21393.t1;Hsc_gene_21393.t2;Hsc_gene_21393.t3;Hsc_gene_21393.t4
|
— |
G5EBX3.1 Cyclin L homolog cyl-1 [Caenorhabditis elegans]
|
KAI1720612.1 cyclin-L2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016538
|
GO:0008150_0.808|GO:0005575_0.772|GO:0110165_0.750|GO:0005622_0.672|GO:0009987_0.643|GO:0016020_0.634|GO:0043226_0.623|GO:0043229_0.618|GO:0065007_0.558|GO:0043227_0.551|GO:0050789_0.541|GO:0043231_0.530|GO:0050794_0.517
|
IPR006671+90-170+|IPR013763+105-210_247-337+|IPR036915+77-232_233-352+|IPR043198+81-423+
|
SM00385+105-210_247-337+
|
PF00134+90-170+Cyclin,_N-terminal_domain|PF21797+259-323+Cyclin-T2-like,_C-terminal_domain
|
— |
PTHR10026+81-423+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;391-464
|
1.000
|
3-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
53649.730
|
10.325
|
34.000
|
31.034
|
9.914
|
52.155
|
47.845
|
19.828
|
11.207
|
43.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1445.450
|
1648.557
|
1660.450
|
1884.628
|
1779.732
|
1639.293
|
1387.773
|
1995.974
|
646.059
|
1340.645
|
1042.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.219
|
— |
0.291
|
-0.115
|
— |
-0.230
|
— |
-0.381
|
— | — | — | — |
3.479
|
No JSON data available for plots.