SCN Proteipedia

Hg_chrom9_TN10mRNA_16657

Organism: Heterodera glycines Gene Locus: chr9:534906-539399 Feature type: polypeptide

Protein Sequence

Length: 352

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.496	1.189	1.291	1.176	1.089	1.675	0.44	1.42	1.705	1.536	1.076	1.671	1.342	0.437	1.391	0.893	0.745	0.517	0.874	0.668	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15746	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.956

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	—	27-58	0.944	—	—	—	—	0.000	—	—	0.172	0.214	0.011	0.480	0.067	0.333	0.324	0.007	0.660	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012462	1.000	1.000	Hsc_gene_21392.t1	Hsc_gene_21392.t1	—	Q61MQ8.1 Guanine nucleotide-binding protein alpha-7 subunit [Caenorhabditis briggsae]	KAI3416390.1 Guanine nucleotide-binding protein alpha-7 subunit [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0007165\|GO:0007186\|GO:0007188\|GO:0019001\|GO:0031683	GO:0005575_0.911\|GO:0110165_0.909\|GO:0008150_0.861\|GO:0016020_0.774\|GO:0071944_0.722\|GO:0009987_0.705\|GO:0005622_0.703\|GO:0050896_0.703\|GO:0005886_0.692\|GO:0065007_0.675\|GO:0050789_0.638\|GO:0050794_0.617\|GO:0003674_0.607\|GO:0051716_0.578\|GO:0007154_0.554\|GO:0023052_0.551\|GO:0005737_0.550\|GO:0043226_0.548\|GO:0007165_0.533\|GO:0043227_0.503	IPR001019+6-351_13-341_13-351_32-352_34-346_35-50_166-188_195-212_217-245_263-272+\|IPR001408+79-88_277-289_295-306_341-352+\|IPR011025+61-180_62-179+\|IPR027417+32-350_35-341+	SM00275+13-351+	PF00503+13-341+G-protein_alpha_subunit	G3DSA:1.10.400.10:FF:000016+62-179+Guanine_nucleotide-binding_protein_alpha-7_subunit\|G3DSA:3.40.50.300:FF:000041+166-341+Guanine_nucleotide-binding_protein_G(I)_subunit_alpha\|G3DSA:3.40.50.300:FF:000692+29-87+Guanine_nucleotide-binding_protein_subunit_alpha	PTHR10218+6-351+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-22	1.000	23-352	9plo_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.537	41181.340	7.561	6.000	30.398	11.080	52.841	47.159	16.761	13.636	40.057

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	638.376	696.748	746.383	346.243	118.170	41.507	38.776	352.736	225.444	1746.104	1094.392

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.146	-1.001	-1.585	-1.494	—	2.987	-3.048	-3.054	—	-3.477	—	—

No JSON data available for plots.

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