Hg_chrom9_TN10mRNA_16659
Organism: Heterodera glycines Gene Locus: chr9:541718-543008 Feature type: polypeptideProtein Sequence
Length: 264
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 0.705 | 1.102 | 1.045 | 1.326 | 0.389 | 0.586 | 1.515 | 0.842 | 0.717 | 1.722 | 0.668 | 0.947 | 0.947 | 1.005 | 1.19 | 2.049 | 1.033 | 0.874 | 0.334 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15748
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRKL,RKRRRR,TKPVPKKPKSEGGTKRK,KRRRRHTSADDDKEDNKKR,RRRRHTSADDDKEDNKKRK,RRRHTSADDDKEDNKKRKR,RRHTSADDDKEDNKKRKRR
|
— | — | — | — |
1-33
|
0.970
|
0.843
|
1.000
|
1.000
|
0.139
|
0.046
|
0.004
|
0.240
|
0.084
|
0.218
|
0.087
|
0.009
|
0.875
|
0.362
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002534
|
3.000
|
1.000
|
Hsc_gene_21376.t1
|
Hsc_gene_21390.t1
|
— | — | — |
OAL03179
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR028064+48-134+|IPR051694+48-206+
|
— |
PF15102+48-134+TMEM154_protein_family
|
— |
PTHR15549+48-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
128-264
|
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
29383.220
|
8.673
|
10.000
|
33.333
|
8.712
|
58.712
|
41.288
|
19.318
|
14.015
|
55.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
271.897
|
16.583
|
14.646
|
27.756
|
105.931
|
688.929
|
31.846
|
493.318
|
1.382
|
671.386
|
384.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.606
|
1.029
|
1.902
|
2.715
|
-4.425
|
-0.595
|
-3.806
|
-9.166
|
4.657
|
— | — |
6.405
|