SCN Proteipedia

Hg_chrom9_TN10mRNA_16663

Organism: Heterodera glycines Gene Locus: chr9:550058-552066 Feature type: polypeptide

Protein Sequence

Length: 262

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.754	0.533	1.041	0.658	0.573	0.783	1.0	1.908	2.036	0.928	1.504	1.796	0.954	0.954	1.869	0.491	0.751	1.099	0.294	0.786	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15752	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.944

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KVKK,PKKHLKRLAAPKK	39-59	0.959	31-52	0.988	—	—	0.000	—	—	0.317	0.246	0.023	0.487	0.208	0.070	0.104	0.003	0.073	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001065	4.000	1.000	Hsc_gene_21386.t1	Hsc_gene_21368.t1;Hsc_gene_21386.t1;Hsc_gene_24003.t1;Hsc_gene_24003.t2	—	P41042.2 Small ribosomal subunit protein eS4 [Drosophila melanogaster]	KAI3414259.1 40S ribosomal protein S4 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412	GO:0005575_0.844\|GO:0110165_0.833\|GO:0005622_0.787\|GO:0003674_0.698\|GO:0043226_0.677\|GO:0043229_0.677\|GO:0005737_0.633\|GO:0008150_0.575\|GO:0043228_0.546\|GO:0043232_0.546\|GO:0005829_0.514\|GO:0016020_0.514	IPR000876+1-241_1-260_7-238+\|IPR002942+47-90+\|IPR013843+3-39+\|IPR013845+95-169+\|IPR014722+175-245+\|IPR018199+8-22+\|IPR032277+212-259+\|IPR036986+1-117+\|IPR038237+122-172+\|IPR041982+175-229+	—	PF00900+95-169+Ribosomal_family_S4e\|PF01479+47-90+S4_domain\|PF08071+3-39+RS4NT_(NUC023)_domain\|PF16121+212-259+40S_ribosomal_protein_S4_C-terminus	G3DSA:2.30.30.30:FF:000005+175-245+40S_ribosomal_protein_S4\|G3DSA:2.40.50.740:FF:000001+122-172+40S_ribosomal_protein_S4\|G3DSA:3.10.290.10:FF:000002+1-117+40S_ribosomal_protein_S4	PTHR11581+1-260+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;262-262	1.000	3-261	6xu8_AE	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.692	29645.940	10.839	31.000	32.061	10.305	45.420	54.580	22.901	9.160	45.038

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	sienna3	12345.414	5641.824	8761.031	14085.574	14097.238	11064.065	8261.079	5019.165	17576.733	15729.895	16521.397

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.406	1.183	0.793	—	-0.334	-0.411	-1.250	0.863	—	—	—	—	—

No JSON data available for plots.

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