Hg_chrom9_TN10mRNA_16668
Organism: Heterodera glycines Gene Locus: chr9:568117-569459 Feature type: polypeptideProtein Sequence
Length: 246
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.709 | 1.04 | 1.256 | 0.981 | 1.355 | 0.417 | 0.484 | 1.626 | 0.994 | 0.769 | 1.663 | 0.717 | 1.016 | 0.86 | 1.161 | 1.103 | 1.533 | 1.109 | 0.938 | 0.239 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRKL,RKRRRR,KPVPKKPKSEGGTKRK,KRRRRHTSADDDKEDNKKR,RRRRHTSADDDKEDNKKRK,RRRHTSADDDKEDNKKRKR,RRHTSADDDKEDNKKRKRR
|
— | — |
39-79
|
0.700
|
1-33
|
0.956
|
0.992
|
1.000
|
1.000
|
0.147
|
0.059
|
0.004
|
0.242
|
0.119
|
0.247
|
0.097
|
0.008
|
0.867
|
0.318
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002534
|
3.000
|
1.000
|
Hsc_gene_21376.t1
|
Hsc_gene_21390.t1
|
— | — | — |
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-246
|
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
27692.340
|
8.393
|
8.000
|
34.959
|
8.943
|
58.130
|
41.870
|
19.919
|
15.041
|
53.252
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
353.892
|
35.968
|
24.662
|
44.148
|
140.629
|
1056.903
|
62.291
|
896.253
|
0.946
|
699.747
|
400.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.776
|
— |
0.950
|
1.641
|
2.924
|
-4.074
|
— |
-3.698
|
-9.338
|
5.390
|
— | — | — |