SCN Proteipedia

Hg_chrom9_TN10mRNA_16670

Organism: Heterodera glycines Gene Locus: chr9:581366-594431 Feature type: polypeptide

Protein Sequence

Length: 1,054

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.883	1.434	0.673	0.458	0.664	2.506	1.288	2.135	0.97	0.91	0.316	1.395	0.764	1.058	1.181	1.098	0.949	0.92	0.438	0.781	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15759	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.002	—	—	0.413	0.109	0.012	0.586	0.209	0.120	0.092	0.008	0.446	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012466	1.000	1.000	Hsc_gene_21374.t1	Hsc_gene_21374.t1	—	Q6RHR9.1 Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 [Mus musculus]	KAI6211964.1 Magi-1 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.858\|GO:0110165_0.837\|GO:0008150_0.673\|GO:0003674_0.660\|GO:0009987_0.604\|GO:0016020_0.600\|GO:0005488_0.588\|GO:0005622_0.581\|GO:0005515_0.528\|GO:0065007_0.525\|GO:0030054_0.523\|GO:0050789_0.514\|GO:0043226_0.506	IPR001202+26-59_27-59_28-57_29-59_32-57_73-106_74-106_76-105_79-104+\|IPR001478+226-297_228-310_229-297_234-313_363-438_364-425_372-442_669-739_674-749_675-747_677-753_786-865_788-868_798-868_810-865_971-1049_973-1041_974-1048_981-1053+\|IPR036020+26-60_65-105+\|IPR036034+207-336_212-318_349-444_354-457_652-773_661-754_766-868_774-869_953-1054_956-1052+	SM00228+234-313_372-442_677-753_798-868_981-1053+\|SM00456+27-59_74-106+	PF00397+28-57+WW_domain\|PF00595+229-297_675-747_810-865_974-1048+PDZ_domain	G3DSA:2.30.42.10:FF:000005+207-338+Membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	PTHR10316+25-1051+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-213;424-668	2.000	214-423;669-1054	2kpl_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.902	114368.110	7.900	24.500	19.829	10.247	49.241	50.759	12.144	7.685	54.649

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1619.647	5802.134	2081.535	1287.549	1181.844	2635.634	1431.416	2321.051	331.928	559.073	461.725

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.708	-2.309	-0.585	-0.155	1.172	-0.871	-0.288	-0.555	—	—	—	—	—

No JSON data available for plots.

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