Hg_chrom9_TN10mRNA_16672
Organism: Heterodera glycines Gene Locus: chr9:605269-609183 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 0.958 | 0.998 | 0.541 | 0.948 | 1.056 | 0.747 | 1.765 | 0.828 | 0.795 | 1.01 | 1.153 | 1.089 | 1.018 | 1.561 | 1.261 | 1.35 | 0.862 | 2.262 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15761
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKQTNSKFFHKRTNKR,KRTNKRVETVKRKARS,RRALAVHWLKALKRERP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.877
|
0.261
|
0.017
|
0.334
|
0.091
|
0.020
|
0.041
|
0.021
|
0.043
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012468
|
1.000
|
1.000
|
Hsc_gene_21371.t1
|
Hsc_gene_21371.t1
|
— |
Q9GYI4.2 Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 [Caenorhabditis elegans]
|
KAF7635724.1 JmjC domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.847|GO:0005575_0.809|GO:0110165_0.808|GO:0009987_0.791|GO:0003674_0.678|GO:0016020_0.673|GO:0005622_0.633|GO:0071840_0.612|GO:0016043_0.608|GO:0005488_0.571|GO:0065007_0.567|GO:0043226_0.553|GO:0050789_0.541|GO:0043229_0.535|GO:0050794_0.527|GO:0043227_0.505
|
IPR003347+169-333_201-316+|IPR050910+19-376+
|
SM00558+169-333+
|
PF02373+201-316+JmjC_domain,_hydroxylase
|
— |
PTHR12480+19-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;372-510
|
1.000
|
40-371
|
6gdy_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
58241.460
|
9.769
|
25.000
|
29.020
|
13.137
|
54.314
|
45.686
|
17.843
|
11.176
|
51.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1595.278
|
1348.448
|
1013.454
|
1106.948
|
1140.194
|
1132.851
|
904.921
|
1229.822
|
1841.162
|
2644.729
|
2300.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.642
|
-0.422
|
0.236
|
— | — |
-0.313
|
— |
-0.299
|
— | — | — | — | — |
No JSON data available for plots.